View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_low_5 (Length: 538)
Name: NF17831_low_5
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 140 - 524
Target Start/End: Complemental strand, 40208484 - 40208100
Alignment:
| Q |
140 |
aataaaattatatgcgacttgtttgtaagtatagctcaattggtagttctaagaatattttatgtgtttgaacgtgagtttaaatctacaattctccact |
239 |
Q |
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| T |
40208484 |
aataaaattatatacaacttgtttgtaagtacagctcaattggtagttctaaagatattttatgtgtttgaacgtgagtttaaatctacaattctctact |
40208385 |
T |
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| Q |
240 |
tctatacgtttagtatgtgtggttcttgtcactaaactatttcgtagtagataaataaattacatgtgacttttatgaattttaattatactacttttaa |
339 |
Q |
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| T |
40208384 |
tctatacgcttagtatgtgtggttcttgtcactaaactatttcgtagtagataaataaattacatgtgatttttatgaattttaattatactacttttaa |
40208285 |
T |
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| Q |
340 |
gagagagaaaaactcactttccaaacaaaatctacccacattttacagcactctcttaatattatgaaaagacgactgataatggggaaaagtttagtag |
439 |
Q |
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| T |
40208284 |
gagagagaaaaactcactttctaaacaaaatctacccacattttacagcactctcttaatattgtgaaaagacgactgataatggggaaaagtttagtag |
40208185 |
T |
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| Q |
440 |
atacatttctttcttttttcccttcatgaaaacaatataacaaaataaatgcacctaactatcattctttataagtttaagatga |
524 |
Q |
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| T |
40208184 |
atacatttctttcttttttcccttcatgaaaacaatataacaaaataaatgcacctaactatcattctttataagtttaagatga |
40208100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 40208948 - 40208862
Alignment:
| Q |
1 |
ttacgataattaactactaccatatgagttatttttaaagaataaaaaacgaaataagtagcgaggttagtttagtaaaattagtat |
87 |
Q |
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| T |
40208948 |
ttacgataattaactactaccatatgagttatttttaaagaataaaaaacgaaataaatagcaaggttagtttagtaaaattagtat |
40208862 |
T |
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