View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_low_9 (Length: 378)
Name: NF17831_low_9
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 46678675 - 46678312
Alignment:
| Q |
11 |
agaatatatgttattagtaagattaagtttgtttgttaacgttattcgagaagagtttgtttgttagttttttaacagttacacaagagttcctattcca |
110 |
Q |
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| T |
46678675 |
agaatatgtgttattagtaagattaagtttgtttgttaacgttattcgagaagagtttgtttgttagttttttaacagttacacaagagttcctattcca |
46678576 |
T |
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| Q |
111 |
acttaaagaagattttgttatgttgtcagttat-------------atgattattatttggtcttttatcttggttctaggaaaaggtttcattttttag |
197 |
Q |
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| T |
46678575 |
acttaaagaagagtttgttatgttgtcagttattttatattcatatatgattattatttggtcttttatcttggttctaggaaaaggtttcattttttag |
46678476 |
T |
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| Q |
198 |
ggagaaaatgaagtgttgatgttagtgtaactttcattacaagtaatatcaaatagtgttagtgtaactctctgaagatggatgcaccaaagaacacccc |
297 |
Q |
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| T |
46678475 |
ggagaaaatgaagtgttgatgttagtgtaactttcattacaagtaatatcaaatagtgttagtgtaactctctgaagatggatgcaccaaagaacacccc |
46678376 |
T |
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| Q |
298 |
tgctttcaacttagaagaggtttctttcaccacttaccattcccatttttctttgcatcacttt |
361 |
Q |
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| T |
46678375 |
tgctttcaacttagaagaggtttctttcaccactcaccattcccatttttctttgcatcacttt |
46678312 |
T |
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