View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17832_high_1 (Length: 647)
Name: NF17832_high_1
Description: NF17832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17832_high_1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 243 - 647
Target Start/End: Complemental strand, 8324412 - 8324008
Alignment:
| Q |
243 |
tatccgattgggaattaagagcgatgaatataataatcgaattagtgaaatgaagagaaaattaccaagggagaaaggaccgattccgagaccgggacga |
342 |
Q |
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| T |
8324412 |
tatccgattgggaattaagagcgatgaatataataatcgaattggtgaaatgaagagaaaattaccgagggagaaaggaccgattccgagaccgggacga |
8324313 |
T |
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| Q |
343 |
agatcaagaacgatagcgcccatggctgtgccttcgcaacggcgtctgggtttctgcaacatagtcggggaagttggagggtattttagagatttctggg |
442 |
Q |
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| T |
8324312 |
agatcaagaacgatagcgcccatggctgtgccttcgcaacggcgtctgggtctctgcaacatagtcggggaagttggagggtattttagagatttctggg |
8324213 |
T |
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| Q |
443 |
ttggaattccgttactatcggagatgaaagtacttcaagatgatgatgtgttgaattgaatgcttgggttggttggttttattggtttagattggaaatg |
542 |
Q |
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| T |
8324212 |
ttggaattccgttactatcggagatgaaagtacttcaagatgatgatgtgttgaattgaatgcttgggttggttggttttattggtttagattggaaatg |
8324113 |
T |
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| Q |
543 |
atattttggtttggatgaaattaaaaaacaaactaacaactttttctttttggacatccaataacgcaaaagttgccccctcttgcacgccacccaaacc |
642 |
Q |
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| T |
8324112 |
atattttggtttggatgaaattaaaaaactaactaacaactttttctttttggacatccaataacgcaaaagttgccccctcttgcacgccacccaaacc |
8324013 |
T |
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| Q |
643 |
cacat |
647 |
Q |
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| T |
8324012 |
cacat |
8324008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 8324655 - 8324502
Alignment:
| Q |
1 |
ctgaacaaaaattctacaatacttaacaacaacactacataactattaataactgataatctaatcgatcnnnnnnnnnnnnnnnnnntcgaaatctgtt |
100 |
Q |
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| T |
8324655 |
ctgaacaaaaactctacaatacttaacaacaacattacataaatattaataactgataatctaatcaatcaaaaacaaaaaacaaaaatcgaaatctgtt |
8324556 |
T |
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| Q |
101 |
tgacctaaatttacagacaagataacgaagaaagattactataatatctaaatt |
154 |
Q |
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| T |
8324555 |
tgacctaaatttacagacaagataacgaagaaagattactataatatataaatt |
8324502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 598
Target Start/End: Complemental strand, 33626222 - 33626171
Alignment:
| Q |
547 |
tttggtttggatgaaattaaaaaacaaactaacaactttttctttttggaca |
598 |
Q |
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| T |
33626222 |
tttggtttggatgaaatggaaaaactaacaaacaagtttttctttttggaca |
33626171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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