View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17832_low_2 (Length: 317)
Name: NF17832_low_2
Description: NF17832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17832_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 8519307 - 8518999
Alignment:
| Q |
17 |
aatatagtgcttagttggtttttattcgttactttattgaaaatattcttccacttttttggctaagcaagattgtggaggttatggcggtttgattaat |
116 |
Q |
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| T |
8519307 |
aatatagtgcttagttggtttttattcgttactttattgaaaatattcttccacttttttggctaagcaagattgtggaggttatggcggtttgattaat |
8519208 |
T |
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| Q |
117 |
tagataattcatgtttctatactatatatctgtct--ctctaggtttgcaaaacaagtgtttatgttaaataa---------------------atattg |
193 |
Q |
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| T |
8519207 |
tagataattcatgtttctatactatatatctgtctctctctacgtttgcaaaacaagtgtttatgttaaataaatattataaaagtttaaatatatattg |
8519108 |
T |
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| Q |
194 |
agccatgctcatgttactttcgaattcaaattttgtcttggactgcctgacatagaatgctccacatggttacatgtgcttggtaatttacattattaca |
293 |
Q |
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| T |
8519107 |
agccatgctcatgttactttcgaattcaaattttgtcttggaccgcctgacttagaatgcttcacatggttacatgtgcttggtaatttacattattaca |
8519008 |
T |
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| Q |
294 |
ttatactat |
302 |
Q |
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| T |
8519007 |
ttatactat |
8518999 |
T |
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