View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17832_low_4 (Length: 216)
Name: NF17832_low_4
Description: NF17832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17832_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 11979901 - 11980086
Alignment:
| Q |
13 |
taattctggagatttcagtttgactgagcctttgtaaactacgaagtctcgaagagataggagcatgagaaaatcatctacggtgcacttgactcaagtt |
112 |
Q |
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| T |
11979901 |
taattctggagatatcagtttgatggagcctctgtaaactacgaagtctcgaagagataggagcatgagaaaatcatctacggtgcacttgactgaagtt |
11980000 |
T |
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| Q |
113 |
atgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgctt |
198 |
Q |
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| T |
11980001 |
atgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgctt |
11980086 |
T |
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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 11953801 - 11953879
Alignment:
| Q |
102 |
tgactcaagttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccat |
180 |
Q |
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| T |
11953801 |
tgactgaagttatgaaaccagaaatttgggaaaagttccctgaagatctatttgaggttgtgcttgcacgacttcccat |
11953879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 34751422 - 34751470
Alignment:
| Q |
111 |
ttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaa |
159 |
Q |
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| T |
34751422 |
ttatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaa |
34751470 |
T |
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