View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17832_low_5 (Length: 214)
Name: NF17832_low_5
Description: NF17832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17832_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 1505783 - 1505963
Alignment:
| Q |
16 |
atgaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1505783 |
atgaatggggtgtgttatttggctttggaccgggacttactattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttca |
1505882 |
T |
|
| Q |
116 |
tgtatcactttcaaatttgcttgattttcatgtaaggatgaaaaacttgtgtagagttcaacatgtaccatcatattaaaa |
196 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1505883 |
tatatcactttcaaatttgcttgatttttatgtaaggatgaaaaacttgtgtagagttcaacatttaccatcatattaaaa |
1505963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 1492974 - 1493119
Alignment:
| Q |
16 |
atgaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattat-tttattttc |
114 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||| || ||||||| | |
|
|
| T |
1492974 |
atgaatggggtgtgctattcggctttggaccaggacttaccattgagactgttgtcttgcgcagtgtagctatataagatgcttaatcatatttatttcc |
1493073 |
T |
|
| Q |
115 |
atgtatcactttcaaatttgcttgattttcatgtaaggatgaaaaa |
160 |
Q |
| |
|
|| ||||||||| |||||||||| ||||| ||||||||| |||||| |
|
|
| T |
1493074 |
atttatcacttttaaatttgctttatttttatgtaaggaagaaaaa |
1493119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 1483004 - 1483099
Alignment:
| Q |
21 |
tggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcat |
116 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||| | ||||||||| ||||||||||| |
|
|
| T |
1483004 |
tggggtgtgttgttcggctttggacctggacttaccattgaaaccgttgttttgcacagtgtggctatatgataagcttaattagtttattttcat |
1483099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 1500048 - 1500138
Alignment:
| Q |
18 |
gaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattatttt |
108 |
Q |
| |
|
||||||||||| || || ||||||||| |||||||||||||||||||||||||||| |||| | | ||||| ||||||| |||| |||| |
|
|
| T |
1500048 |
gaatggggtgtattgttaagctttggacctggacttaccattgaaactgttgttttgcatagtatagttatataagatgctcaattttttt |
1500138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 1487479 - 1487559
Alignment:
| Q |
19 |
aatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgctt |
99 |
Q |
| |
|
||||||| ||||| || |||||||||| |||||||||||||||||||||||| | | |||| | | |||||||||||||| |
|
|
| T |
1487479 |
aatggggagtgttgttcggctttggacctggacttaccattgaaactgttgttctccatagtatggttatatgagatgctt |
1487559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 1478810 - 1478860
Alignment:
| Q |
21 |
tggggtgtgttatttggctttggactgggacttaccattgaaactgttgtt |
71 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
1478810 |
tggggtgtgttgtttggctttggacctggactcaccattgaaacagttgtt |
1478860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 44142015 - 44142189
Alignment:
| Q |
24 |
ggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcatgtatcac |
123 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
44142015 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttacgcagtgtcgctatatgaggtgcttaattattttattatcttgtatcac |
44142114 |
T |
|
| Q |
124 |
tttcaaatttgcttgattttcatgtaaggatgaaaaacttgtgtagagttcaacatgtaccatcatattaaaaat |
198 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44142115 |
tttcaaattttcttgatttttatgtaaggttgaaaaacttgtctagagttcaacatgtaccatcatattaaaaat |
44142189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 44133593 - 44133764
Alignment:
| Q |
24 |
ggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcatgtatcac |
123 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||| | |||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
44133593 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtatcgctatatgaggtgcttatttattttattttcatgtatcac |
44133692 |
T |
|
| Q |
124 |
tttcaaatttgcttgattttcatgtaaggatgaaaaacttgtgtagagttcaacatgtaccatcatattaaaa |
196 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| ||| || | ||||||||||| ||| ||||||||| |
|
|
| T |
44133693 |
cttcaaatttgcttgatttttatgtaaggatgaataacctgtctaca-ttcaacatgtaacataatattaaaa |
44133764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 44129385 - 44129558
Alignment:
| Q |
21 |
tggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcatgtat |
120 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
44129385 |
tggggtgttttatttggctttggaccaggtcttactattgaaactgttgttttgcgcagtgtcgctatatgaggtgcttaattattttattttcatgaat |
44129484 |
T |
|
| Q |
121 |
cactttcaaatttgcttgattttcatgtaaggatgaaaaacttgtgtagagttcaacatgtaccatcatattaaaa |
196 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||| ||| || | ||||||||||| |||||||||||| |
|
|
| T |
44129485 |
cactttcaaatttgcttgatttt-ttgtaaggatgaataacctgtctaca-ttcaacatgtaatatcatattaaaa |
44129558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 46706303 - 46706141
Alignment:
| Q |
17 |
tgaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || |
|
|
| T |
46706303 |
tgaatggggtgtgttatttggctttggaccaggacttaccatagaaactgttgttttgcacagtgtcgctatatgaaatgcttaattattttatttttat |
46706204 |
T |
|
| Q |
117 |
gtatcactttcaaatttgcttgattttcatgtaaggatgaaaaacttgtgtagagttcaacat |
179 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| || || |||||||||| |
|
|
| T |
46706203 |
ttatcacttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacat |
46706141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 5303303 - 5303480
Alignment:
| Q |
17 |
tgaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcat |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
5303303 |
tgaatggggtgtgttatttggttttggaccaggacttacaattgaaacggttgttttgcgcagtgtcgctatatgagatgcttaattattttgttttcat |
5303402 |
T |
|
| Q |
117 |
gtatcactttcaaatttgcttgattttcatgtaaggatgaaaaacttgtgtagagttcaacatgtaccatcatattaaa |
195 |
Q |
| |
|
|||||| ||| |||||| || ||||| | ||||||||| ||| | | ||| |||||||||||||| |||||||||| |
|
|
| T |
5303403 |
gtatcaattttcaatttgtttaatttttacgtaaggatg-aaatttcatctagtgttcaacatgtaccctcatattaaa |
5303480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 5289012 - 5288913
Alignment:
| Q |
17 |
tgaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcat |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
5289012 |
tgaatggggtgtcttatttggttttggaccaggacttaccattgaaactgttgttttacgtagtgtggccatatgagatgtttaattattttattttcat |
5288913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 5285115 - 5285262
Alignment:
| Q |
17 |
tgaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttat------ |
110 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||| | |
|
|
| T |
5285115 |
tgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagatgcttaatttttttttcttttc |
5285214 |
T |
|
| Q |
111 |
tttcatgtatcactttcaaatttgcttgattttcatgtaaggatgaaa |
158 |
Q |
| |
|
|||||| ||||| ||| |||||| || ||||| |||||||||||||| |
|
|
| T |
5285215 |
tttcatttatcaattttcaatttgtttaatttttatgtaaggatgaaa |
5285262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 5315918 - 5316051
Alignment:
| Q |
17 |
tgaatggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcat |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||| || |
|
|
| T |
5315918 |
tgaatggggtgtattatttggttttggaccaggacttaccattgaaacggttgttttgcgcagcgtggctatatgagatgctta-----tttatttttat |
5316012 |
T |
|
| Q |
117 |
gtatcactttcaaatttgcttgattttcatgtaaggatg |
155 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||| |||| |
|
|
| T |
5316013 |
gtatcgatttcaaatttgtttaatttttatgtaatgatg |
5316051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 5311208 - 5311307
Alignment:
| Q |
21 |
tggggtgtgttatttggctttggactgggacttaccattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcatgtat |
120 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||| ||| |
|
|
| T |
5311208 |
tggggtgtattatttggttttggaccaggacttaccattgaaacagttgttttgcgtagtgtgaccatatgagatgtttaa-tattttattttcatttat |
5311306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University