View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_103 (Length: 250)
Name: NF17833_high_103
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_103 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 29189351 - 29189601
Alignment:
| Q |
10 |
aagaatattctactagatgacacttggcaccactatgatctaattctacttgtttgtgatcttggtctatatttagattgatagtgaatcttgtagaatc |
109 |
Q |
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| T |
29189351 |
aagaatattctactagatgacacttggcaccactatgatctaattctacttgtttgtgatcttggtctatatttagattgatagtgaatcttgtagaatc |
29189450 |
T |
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| Q |
110 |
acactttgccatcatgattttgagaaaagtcacactttgaaacttcattagaatcac--------gattttgccaaactcatctttgttgcatagacac- |
200 |
Q |
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| T |
29189451 |
acactttgccatcatgattttgagaaaagtcacactttgaaacttcaatagaattacaatgtcgttattttgccaaactcatctctgttgcatagacaca |
29189550 |
T |
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| Q |
201 |
-ttctgattgaaggtgtgtctcgatgtacgacacatattttgtttcttata |
250 |
Q |
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| T |
29189551 |
attctgattgaaggtgtgtctcggtgtacgacacatattttgtttcctata |
29189601 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 45730044 - 45730078
Alignment:
| Q |
184 |
ctttgttgcatagacacttctgattgaaggtgtgt |
218 |
Q |
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| T |
45730044 |
ctttgttgcatggacacttctgattgaaggtgtgt |
45730078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 48963992 - 48964041
Alignment:
| Q |
184 |
ctttgttgcatagacacttctgattgaaggtgtgtctcgatgtacgacac |
233 |
Q |
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| T |
48963992 |
ctttgttgcatggacacttctgattgaaggtatgtcccggtgttcgacac |
48964041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 24462205 - 24462242
Alignment:
| Q |
182 |
atctttgttgcatagacacttctgattgaaggtgtgtc |
219 |
Q |
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| T |
24462205 |
atctttgttgcacagacacttctgattgaaggcgtgtc |
24462242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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