View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_104 (Length: 250)
Name: NF17833_high_104
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_104 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20179187 - 20178947
Alignment:
| Q |
1 |
tcaccaaaagtaaaaaa-caaactttttaccgtttcacgttgtaacttcgtttcttagcattagtagtagtagacgacaatctcagtttccgatccttgc |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20179187 |
tcaccaaaagtaaaaaaacaaactttttaccgtttcacgttgtaacttcgtttcttagcattagtagtagtagacgacaatctcagtttccgatccttgc |
20179088 |
T |
|
| Q |
100 |
gtttcaacggttcaatcaccgagtctctaaaccggcacggtaaagcttggttccttcctcttttagaccgaaccaccggttcattttcatacaaatccac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20179087 |
gtttcaacggttcaatcaccgagtctctaaaccggcacggtaaagcttggttccttcctcttttagaccgaaccaccggttcattttcatacaaatccac |
20178988 |
T |
|
| Q |
200 |
aacaacccgagtcattaactccgttccggttcgtttctctg |
240 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20178987 |
aacaacccgagccattaactccgttccggttcgtttctctg |
20178947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University