View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_105 (Length: 250)
Name: NF17833_high_105
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_105 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 6572305 - 6572164
Alignment:
| Q |
21 |
tcaagagtgacttgaaagaatgacgaaagaaatgctccagcaatcagctctgccatgatattgtagtgaaatcctgagaggttcactgcaa-aacgat-- |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||| ||||||||| | || |
|
|
| T |
6572305 |
tcaagagtgacttgaaagaacgacgaaagaaatgctccagcaatcagctctgccatgatattgtggtcaaagccagagaggctcactgcaagatatatat |
6572206 |
T |
|
| Q |
118 |
-aatatgttatcttctgttaagcaaaatagaacaagaactat |
158 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6572205 |
aaatatgttatcttctgttaagcaaaatgaaacaagaactat |
6572164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 6837891 - 6837742
Alignment:
| Q |
23 |
aagagtgacttgaaagaatgacgaaagaaatgctccagcaatcagctctgccatgatattgtagtgaaatcctgagaggttcactgcaaaacgataatat |
122 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||||| |
|
|
| T |
6837891 |
aagaatgactggaaagaatgacgaaagaactgctccgccaaccagctctgccatgatattgtagtcaaatcctcagaggctcactgcaagttgataatat |
6837792 |
T |
|
| Q |
123 |
gttatcttctgttaagc-----aaaatagaacaagaactatctttctata |
167 |
Q |
| |
|
||||| ||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
6837791 |
gttatattctgttgagcaaaataaaatagaaccagaactatctttctata |
6837742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 8472582 - 8472680
Alignment:
| Q |
23 |
aagagtgacttgaaagaatgacgaaagaaatgctccagcaatcagctctgccatgata-ttgtagtgaaatcctgagaggttcactgcaaaacgataat |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| ||||||| |||| |||||||||||| ||||| |
|
|
| T |
8472582 |
aagagtgacttgaaagaatgatgaaagaaatgctccaccaatcaactctgccatgatatttgtagtcaaatcctaagagactcactgcaaaactataat |
8472680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 8567952 - 8567899
Alignment:
| Q |
30 |
acttgaaagaatgacgaaagaaatgctccagcaatcagctctgccatgatattg |
83 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
8567952 |
acttgaaagacagacgaaagaaatgcccccgcaatcagctctgccatgatattg |
8567899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 5299795 - 5299853
Alignment:
| Q |
21 |
tcaagagtgacttgaaagaatgacgaaagaaatgctccagcaatcagctctgccatgat |
79 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||| || ||||||||||| |
|
|
| T |
5299795 |
tcaagagccacttgaaagaatgatgaaagaaatgctccaccaaccaattctgccatgat |
5299853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 8472824 - 8472862
Alignment:
| Q |
171 |
cttttatatttctttatcactgttgttttctgaaatcaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8472824 |
cttttatatttctttatcactgttgtttttagaaatcaa |
8472862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University