View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_110 (Length: 248)
Name: NF17833_high_110
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_110 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 27763698 - 27763475
Alignment:
| Q |
19 |
gaaaagaatctatctcccaatctttgctattaaaggaaataccatatttaagatttgtgaaaaatcccaacaacaaaagatgaagtacaatnnnnnnnnn |
118 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||| || | | ||||||||||||||| | |||||||| | |||||||||||| |
|
|
| T |
27763698 |
gaaaagaatctatctctccatctttgctattaagggaaataacacaatagagatttgtgaaaaatgctaacaacaataaatgaagtacaataaaaa---- |
27763603 |
T |
|
| Q |
119 |
ngtgtgatatatatgaaagaaaacaaaccctttgaacataggattcaggcatgagtgaacgaagtacagcaagatgttcattcatttgttttctacggtt |
218 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27763602 |
-gtgtgata-atataaaagaaaacaaaccctttgaacataggattcaggcatgagtgaacgaagtacagcaagatgttcattcatttgttttctacggtt |
27763505 |
T |
|
| Q |
219 |
tctttcaacagtaatatgtgtgattctttg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27763504 |
tctttcaacagtaatatgtgtgattctttg |
27763475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University