View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_111 (Length: 248)
Name: NF17833_high_111
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_111 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 18091693 - 18091901
Alignment:
| Q |
13 |
agaaaaaagtaaaagtagtagttcatgttgggtcatttagtcatgggtcaataaacaataagtagaatattcaaagtaaactactaaaggatgagtagtt |
112 |
Q |
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| T |
18091693 |
agaaaaaaataaaagtagtagttcatgtcgggtcatttagtcatgggtcaataaacaataagtagaatattccaagtaaactactaaagtatgagtagtt |
18091792 |
T |
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| Q |
113 |
caaattaaatggctgttcttattcaacaaaaatcatatataaatagacatattgagctcctcattaaactcacttgtattgaacaagttcaatagctcat |
212 |
Q |
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| T |
18091793 |
caaattaaatggctgttcttattcaacaaaaatcatatataaatagacatattgagctcctcattaaactcacttgtattgaacaagttcaatagctcat |
18091892 |
T |
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| Q |
213 |
agttctctc |
221 |
Q |
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||||||||| |
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| T |
18091893 |
agttctctc |
18091901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 18101912 - 18101988
Alignment:
| Q |
145 |
tcatatataaatagacatattgagctcctcattaaactcacttgtattgaacaagttcaatagctcatagttctctc |
221 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||| |
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| T |
18101912 |
tcatatataaatagacatattgagctcctcatgatactcacttgtattgaacaagttcaataattcatagttgtctc |
18101988 |
T |
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