View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_112 (Length: 245)
Name: NF17833_high_112
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_112 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 17408085 - 17407929
Alignment:
| Q |
16 |
actatctttgtactagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcaga |
115 |
Q |
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| T |
17408085 |
actatctttgcattagagaacgcgaagctgtgcaaggaaggcggcacaaagatccaagaaaagaaactggggaccctcaagcctttgaagatcaagcaga |
17407986 |
T |
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| Q |
116 |
tatttctcctgagttttgtacaactgtaaaagatattaacacaagtttgagaatgtt |
172 |
Q |
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| T |
17407985 |
tatttctcctgagttttgtacagctgtgaaagatattaacataggtttgagaatgtt |
17407929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 4049680 - 4049825
Alignment:
| Q |
27 |
actagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctg |
126 |
Q |
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| T |
4049680 |
actacagaacacgaagctgcgcaaggaaggcagcacaaagatccaagaaaagaaactggggtccctcaagtctttgaagatcaagcagatatttctcctg |
4049779 |
T |
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| Q |
127 |
agttttgtacaactgtaaaagatattaacacaagtttgagaatgtt |
172 |
Q |
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| T |
4049780 |
agttttgtacagctgtaaaagatattaacaaatgtttgagaatgtt |
4049825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 17412678 - 17412546
Alignment:
| Q |
39 |
gaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaa |
138 |
Q |
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| T |
17412678 |
gaagccgctcaaggaaggaagcacaaagatccaagaaagcaaattggggtccctcaagcctttgaatatcaagtagatatttctcctcagttttgtacaa |
17412579 |
T |
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| Q |
139 |
ctgtaaaagatattaacacaagtttgagaatgtt |
172 |
Q |
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| T |
17412578 |
ctacaaaagatattaacacaa-cttgagaatgtt |
17412546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 2783393 - 2783518
Alignment:
| Q |
21 |
ctttgtactagagaacgcgaagctgcgcaaggaaggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatattt |
120 |
Q |
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| T |
2783393 |
ctttgcactagagaacacgaagctgcgcaaggaaggcaacacaaagatccaagaaaagaaactggggatcctcaaccctttgaagatcaaacagatactt |
2783492 |
T |
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| Q |
121 |
ctcctgagttttgtacaactgtaaaa |
146 |
Q |
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| T |
2783493 |
ctcctgagttttgtagagctgtaaaa |
2783518 |
T |
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