View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_115 (Length: 242)
Name: NF17833_high_115
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_115 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 46676968 - 46677185
Alignment:
| Q |
9 |
agcaaaggtggtcttgtaactgccatgttaagtgctccaaatgataaacaacgtccactttttgctgccaaggatatcaagcccttttacttggaacatt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46676968 |
agcacaggtggtcttgtaactgccatgttaagtgctccaaatgataaacaacgtccactttttgctgccaaggatatcaagcccttttacttggaacatt |
46677067 |
T |
|
| Q |
109 |
gtccaaagattttcccacaacagaagtaagtatacatattcaaaccaattgcacttattctggtgcattaagttcattgaatagcttatgtatctgataa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46677068 |
gtccaaagattttcccacaacagaagtacgtatacatattcaaaccaattgcacttattctggtgcattaagttcattgaataacttatgtatctgataa |
46677167 |
T |
|
| Q |
209 |
ataaatataatttgtatt |
226 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
46677168 |
atatatataatttgtatt |
46677185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 46680949 - 46681077
Alignment:
| Q |
8 |
aagcaaaggtggtcttgtaactgccatgttaagtgctccaaatgataaacaacgtccactttttgctgccaaggatatcaagcccttttacttggaacat |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46680949 |
aagcacaggtggtcttgtaactgccatgttaagcgctccgaatgataaaaagcgcccactttttgctgccaaggatatcaagcccttttacttggagcat |
46681048 |
T |
|
| Q |
108 |
tgtccaaagattttcccacaacagaagta |
136 |
Q |
| |
|
| ||||||||| ||||||||||| ||||| |
|
|
| T |
46681049 |
tctccaaagatcttcccacaacaaaagta |
46681077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 6091061 - 6090991
Alignment:
| Q |
60 |
cgtccactttttgctgccaaggatatcaagcccttttacttggaacattgtccaaagattttcccacaaca |
130 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| | |||||||| || || |||||||||||||| |
|
|
| T |
6091061 |
cgtccactttttgctgccaaagatatcaagcccttttaccttgaacattgccctaaaattttcccacaaca |
6090991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University