View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_116 (Length: 238)
Name: NF17833_high_116
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_116 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 20179272 - 20179490
Alignment:
| Q |
3 |
aagagatgtttattgattattacatacatttgaaacacggatacaaacaccgatatcagatatcagatacgacactgacacgttaacgtaactaatagtt |
102 |
Q |
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| T |
20179272 |
aagagatgtttattgattattacatacatttgaaacacggatacaaacaccgatatcagatatcagatacgacactgacacgttaacgtaattaatagtt |
20179371 |
T |
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| Q |
103 |
taagaaaatcgtataattcagtataattatgtgttaatgtcgtgttagatacgacacgtgtccgacgtcggaacatgtctaatttaaaaagtctttatgc |
202 |
Q |
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| T |
20179372 |
taagaaaatcatataattcagtataattatgtgttgatgttgtatcagatacgacacgtgtccgacgttggaacatgtctaatttaaaaagtctttatgc |
20179471 |
T |
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| Q |
203 |
ttcatagttaacttatagg |
221 |
Q |
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||||||||||||||||||| |
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| T |
20179472 |
ttcatagttaacttatagg |
20179490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 49653025 - 49652971
Alignment:
| Q |
93 |
actaatagtttaagaaaatcgtataattcagtataattatgtgttaatgtcgtgt |
147 |
Q |
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| T |
49653025 |
actaataatttaagaaaatcagataattcagtataattatatgttggtgtcgtgt |
49652971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 35999376 - 35999336
Alignment:
| Q |
92 |
aactaatagtttaagaaaatcgtataattcagtataattat |
132 |
Q |
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| T |
35999376 |
aactaataatttaagaaaatcatataatttagtataattat |
35999336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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