View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_13 (Length: 615)
Name: NF17833_high_13
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 111 - 613
Target Start/End: Complemental strand, 41560698 - 41560209
Alignment:
| Q |
111 |
gcatgactattcacacaaaatttctatcatgatctctgtaacatgtgcccttagtgcatgaaaatttatcatttggataactactaggaaaagtgataga |
210 |
Q |
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| T |
41560698 |
gcatgactattcacacaaaatttctatcatgatctctgtaacatgtgcccttagtgcatgaaaatttatcatttggataactactaggaaaagtgataga |
41560599 |
T |
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| Q |
211 |
aaggaaaaagttaccatgaagaaaccccattcagaacatgctttggcgagttcatgaacagcctttgtgtggatttcgaggtcatctgaagttaggagag |
310 |
Q |
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| T |
41560598 |
aaggaaaaagttaccatgaagaaaccccattcagaacatgctttggcgatttcatgaacagcctttgtgtggattttgaggtcatctgaggttaggagag |
41560499 |
T |
|
| Q |
311 |
agaaatcaatgactgagatggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgtgagggagtggtaacttgaaggaataggaaaggc |
410 |
Q |
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| T |
41560498 |
agaaatcaatgactgggatggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgcgagggagtggtaacttgaaggaataggaaaggc |
41560399 |
T |
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| Q |
411 |
tccgtttgattgtgcaaaggatttgatacttgaaatatttgatgcatcaacttttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgta |
510 |
Q |
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| T |
41560398 |
---------------------tttgatacttgaaatatttgatgcatcaacttttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgta |
41560320 |
T |
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| Q |
511 |
tatttgagtga--------ttggtattgaattaatagtattgatgtaattataaacagacagaattattgaagtgtgatcttgaagagaaataagaagtg |
602 |
Q |
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| T |
41560319 |
tatttgagtgattgagtggttggtattgaattaatagtattgatgtaattataaacagacagaattattgaagtgtgatcttgaagagaaataagaagtg |
41560220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 207 - 517
Target Start/End: Complemental strand, 41555949 - 41555640
Alignment:
| Q |
207 |
tagaaaggaaaaagttaccatgaagaaaccccattcagaacatgctttggcgagttcatgaacagcctttgtgtggatttcgaggtcatctgaagttagg |
306 |
Q |
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| T |
41555949 |
tagaaaggaaaa-gttaccatgaagaaaccccattcagaacatgccttggctagttcatgaacagcttttgtgtggatttgagggtcatctgaagtgagc |
41555851 |
T |
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| Q |
307 |
agagagaaatcaatgactgagatggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgtgagggagtggtaacttgaaggaataggaa |
406 |
Q |
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| T |
41555850 |
agagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatgagag |
41555751 |
T |
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| Q |
407 |
aggctccgtttgattgtgcaaaggatttgatacttgaaatatttgatgcatcaacttttgtaggttctgatgatgaaatgaaaggagctgaagccatgga |
506 |
Q |
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| T |
41555750 |
aggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccatgga |
41555651 |
T |
|
| Q |
507 |
tgtatatttga |
517 |
Q |
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| T |
41555650 |
tgtatctttga |
41555640 |
T |
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Back To:
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