View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_14 (Length: 611)
Name: NF17833_high_14
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 5121307 - 5120731
Alignment:
| Q |
1 |
atgtgtgctcttaaaggtttcttgaaatccatttatcaattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactcttggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5121307 |
atgtgtgctcttaaaggtttcttgaaatccatttatcaattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactcttggaga |
5121208 |
T |
|
| Q |
101 |
agctgccaagcgttaaactaaacatgctcctctcttaagatagatttgaattgtatgaagcaagaagcttcattgtttagaatatcagtgagaaaaacaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5121207 |
agttgccaagcgttaaactaaacatgctcctctcttaagatagatttgaattgtatgaagcaagaagcttcattgtttagaatatcagtgagaaaaacaa |
5121108 |
T |
|
| Q |
201 |
aaactttcattagattttttatatnnnnnnnttattaatttatataatttgaagcattgttaattagttgagaataatagcttattacatgtatgatatg |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5121107 |
aaactttcattagattttttatataaaaaaattattaatttatataatttgaagcattgttaattagttgagaataatagcttattacatgtatgatatg |
5121008 |
T |
|
| Q |
301 |
tttgttttattttggnnnnnnnatactaaaatttcagtagtattcgttaatgttgctgaaactcatacaattaatacattatgttgcatttattatattt |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5121007 |
tttgttttattttggtttttttatactaaaatttcagtagtattcgttaatgttgctgaaactcatacaattaatacattatgttgcatttattatattt |
5120908 |
T |
|
| Q |
401 |
cagagcaccaagttatttgagggacttggacctttattatggaatactgttggtactattgcagtatttttacaggtacgttacatgtgactgtcattac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5120907 |
cagagcaccaagttatttgagggacttggacctttattatggaatactgttggtactattgcagtatttttacaggtacgttacatgtgactgtcattac |
5120808 |
T |
|
| Q |
501 |
atattattttcttgttggatttcttttctttagcatctctagcaaacatcttcttttgttagtaatannnnnnnagagctttactatttgttac |
594 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5120807 |
atatta-----------------ttttctttagcatctctagcaaacatcttcttttgttagtaatatttttttagagctttactatttgttac |
5120731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 40819325 - 40819213
Alignment:
| Q |
38 |
aattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactcttggagaagctgccaagcgttaaactaaacatgctcctctctta |
137 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||| ||||||||||||| ||||||| ||||| || | ||| ||||||||| |||||||| ||||| |
|
|
| T |
40819325 |
aattttttattctatttttcacgtctttccctgaacacacacatgtaatccaactcttcgagaaattgtctagcactaaactaaatatgctcctttctta |
40819226 |
T |
|
| Q |
138 |
agatagatttgaa |
150 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
40819225 |
acatatatttgaa |
40819213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 499
Target Start/End: Complemental strand, 40818845 - 40818694
Alignment:
| Q |
348 |
taatgttgctgaaactcatacaattaatacattatgttgcattta-ttatatttcagagcaccaagttatttgagggacttggacctttattatggaata |
446 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| |||| || ||||| ||| |||||||| || ||||||| || ||||| |||||||||||||||| |
|
|
| T |
40818845 |
taatgttgctcaaactcatgcaactaatactttatttttcattttgttaagtttcagaggacgg-gttatttccggaacttgcacctttattatggaatt |
40818747 |
T |
|
| Q |
447 |
ctgttggtactattgcagtatttttacaggtacgttacatgtgactgtcatta |
499 |
Q |
| |
|
|| ||||||||||||| |||||||||| ||| || | ||| ||||| ||||| |
|
|
| T |
40818746 |
cttatggtactattgcaatatttttacaagtatgtaatatgcgactgacatta |
40818694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 9516263 - 9516320
Alignment:
| Q |
38 |
aattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactctt |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
9516263 |
aattttttattctatttttcacgtctttcccttaacacacacatgtaatccaactctt |
9516320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 499
Target Start/End: Original strand, 9516753 - 9516914
Alignment:
| Q |
338 |
tagtattcgttaatgttgctgaaactcatacaattaatacattatgttgcatttattatatttcagagcaccaagttatttgagggacttggacctttat |
437 |
Q |
| |
|
|||| |||| |||||||||| |||||||| |||||||||| |||| || ||||| ||| ||||| || | || ||||||| | ||||| ||||||| |
|
|
| T |
9516753 |
tagttttcgataatgttgctcaaactcatgcaattaatactttatttttcattttttaagtttcaaaggatcaggttatttccagaacttgctcctttat |
9516852 |
T |
|
| Q |
438 |
tatggaatactgttggtactattgcagtatttttacaggtacgttacatgtgactgtcatta |
499 |
Q |
| |
|
|||||||| || ||||||||||||| || || |||||||| || | ||||||||| ||||| |
|
|
| T |
9516853 |
tatggaattcttatggtactattgcaatacttgtacaggtatgtaatatgtgactgacatta |
9516914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 45158888 - 45158942
Alignment:
| Q |
424 |
acttggacctttattatggaatactgttggtactattgcagtatttttacaggta |
478 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
45158888 |
acttgcacctttattatggaattcttttggtactattgcagtacttttacaggta |
45158942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University