View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_15 (Length: 602)
Name: NF17833_high_15
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_15 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 40466248 - 40465669
Alignment:
| Q |
1 |
agagagatggaaatgaaggtatcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaac |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40466248 |
agagagatagaaatgaaggtatcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaac |
40466149 |
T |
|
| Q |
101 |
ttggaaaagaattggtaattattactacttttgaannnnnnnnncattttccttattttatcatcatgaataatacaatannnnnnncataacttcttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40466148 |
ttggaaaagaattggtaattattactacttttgaatttttttt-cattttccttattttatcatcatgaataatacaatatttttt-cataacttc---- |
40466055 |
T |
|
| Q |
201 |
tttgtctttgtactttagtgcttaatttatttatatactctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtatttggttcacctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
40466054 |
---gtctttgtactttagtgcttaatttatttatatactctctgtaacaaaatataagtaaaagcgagtcaaagaaatttgacgtatttgtttcacctat |
40465958 |
T |
|
| Q |
301 |
atac-------ataatatggtgtttagttctaaacttcgttgtattttgatatataaaaaggtgtcaagaaatattgacctagtttatggaggaggcagc |
393 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465957 |
atacctatgatataatatggtgtttagttctaaacttcgttgtattttgatatataaaaaggtgtcaagaaatattgacctagtttatggaggaggcagc |
40465858 |
T |
|
| Q |
394 |
attggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattgggtaagccaagagcttcatattcttatttttaaagctatttg |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |
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| T |
40465857 |
attggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattgggtaag-caagagcttca---tcttctttttaaagctatttg |
40465762 |
T |
|
| Q |
494 |
tttgtatttacggaaaccctagcataatcacattgtgtcaccgtgatattgtcaaattttttcgtgattctaaaatgcacgactgctatatatt |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40465761 |
tttgtatttacggaaaccctagcataatcacattgtgtcaccgtgatattgtcaaa-tttttcgtgattctaaaatgcacgactgctatatatt |
40465669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 348 - 454
Target Start/End: Original strand, 21625299 - 21625405
Alignment:
| Q |
348 |
taaaaaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgta |
447 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
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| T |
21625299 |
taaaaaggtgtcaagaaatattgatttggtttatggaggaggcagcattggtttgatggggttggtttctcaagctgtttctgatggaggtcgacatgtg |
21625398 |
T |
|
| Q |
448 |
attgggt |
454 |
Q |
| |
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||||||| |
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| T |
21625399 |
attgggt |
21625405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 21624013 - 21624111
Alignment:
| Q |
21 |
atcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
119 |
Q |
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||||||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||| || |||||||| |
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| T |
21624013 |
atcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
21624111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 28271509 - 28271406
Alignment:
| Q |
352 |
aaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattg |
451 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||| ||| |||| ||||||||| |||||||||| ||||||| || | |
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| T |
28271509 |
aaggtgtcaagaaatattgatctagtttatggaggaggaagcattggtctaatgggtttggtttcacaagctgttcatgatggtggaagacatgtcatag |
28271410 |
T |
|
| Q |
452 |
ggta |
455 |
Q |
| |
|
|||| |
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| T |
28271409 |
ggta |
28271406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 28272022 - 28271927
Alignment:
| Q |
22 |
tcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggta |
117 |
Q |
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|||||||| ||||| ||||||| |||||||| ||||| ||||| || |||| ||| ||| | |||||||| |||||||||||||| ||||||||| |
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| T |
28272022 |
tcaaagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 77216 - 77319
Alignment:
| Q |
352 |
aaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattg |
451 |
Q |
| |
|
||||| ||||| || ||||| || || ||||||||||| ||||||||| | ||||| || |||||||||||||| ||||||||||||| ||||| |||| |
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| T |
77216 |
aaggtttcaaggaacattgatcttgtgtatggaggaggaagcattggtctcatgggtttagtttctcaagctgttcatgatggtggtcgccatgtcattg |
77315 |
T |
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| Q |
452 |
ggta |
455 |
Q |
| |
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|||| |
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| T |
77316 |
ggta |
77319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 40889068 - 40888965
Alignment:
| Q |
352 |
aaggtgtcaagaaatattgacctagtttatggaggaggcagcattggtttgatggggttgatttctcaagctgtttatgatggtggtcgacatgtaattg |
451 |
Q |
| |
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||||| ||||| || ||||| || || ||||||||||| ||||||||| | ||||| || |||||||||||||| ||||||||||||| ||||| |||| |
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| T |
40889068 |
aaggtttcaaggaacattgatcttgtgtatggaggaggaagcattggtctcatgggtttagtttctcaagctgttcatgatggtggtcgccatgtcattg |
40888969 |
T |
|
| Q |
452 |
ggta |
455 |
Q |
| |
|
|||| |
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|
| T |
40888968 |
ggta |
40888965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 38462751 - 38462800
Alignment:
| Q |
240 |
ctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtattt |
289 |
Q |
| |
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|||| |||||||||||||| ||||||| |||||||||| |||| |||||| |
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| T |
38462751 |
ctctgtaacaaaatataagcaaaagcgagtcaaagaaagttgaggtattt |
38462800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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