View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_20 (Length: 568)
Name: NF17833_high_20
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 100 - 551
Target Start/End: Complemental strand, 15497079 - 15496622
Alignment:
| Q |
100 |
atgtacataaatttgtagctgaaatagaaaagaatcaaacttatactctttgtaaatacttttcaagataaatgac---taatgttaatacaaaagaaaa |
196 |
Q |
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| T |
15497079 |
atgtacataaatttgtagctgaaatagaaaagaatcaaacttatactctttgtaaatatttttcaagataaatgacgtctaatgttaatacgaaagaaa- |
15496981 |
T |
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| Q |
197 |
atataaaaagacgtgtttaaagcttaaattaagttaaacgatacttgttata--gttttgcctaatttaaaaagacaatctataatatttataatttttt |
294 |
Q |
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| T |
15496980 |
-tataaaaagacgtgtttaaagcttaaattaagttaaacgatacttgttatatagttttgcctaatttaaaaagacaatctataatatttataatttttt |
15496882 |
T |
|
| Q |
295 |
agtctataatatttataattgttttcgtatgaactcacatggtgtacttattctctttcaaatatgtgtttgttctctggtacaacttagtttatactct |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||| ||||||| || |
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| T |
15496881 |
agtctataatatttataattgttttcgtatgaactcacatggtgtacttactctcttttaaatatgcgtttgttctctgatacaacttaatttataccct |
15496782 |
T |
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| Q |
395 |
ttttattgttgttg---ttaatgtctaatttagtagaaacttgtgagcggttgagaccccatactccttggattttacctgggtgacattagtgtatttt |
491 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
15496781 |
ttttattgttgttgttattaatgtctaatttagtagaaatttgtgagcgattgagaccctatactccttggattttacctgggtgacattagtgcatttt |
15496682 |
T |
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| Q |
492 |
agatgagatcttcttggaggattggacaaaaatatcgtcttcatcccgatagttggctct |
551 |
Q |
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| T |
15496681 |
agatgaaatcttcttggaggattggacgaaaatatcgtcttcatcccgatagttggctct |
15496622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15497143 - 15497063
Alignment:
| Q |
1 |
aggaagcatgtatttgaacgagcttaatggtggaacattctttacgatatactattcaataatcatgtacataaatttgta |
81 |
Q |
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| T |
15497143 |
aggaagcatgtatttgaacgagcttaatggtggaacattctttacgatatactattcaataatcatgtacataaatttgta |
15497063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 499
Target Start/End: Complemental strand, 26847246 - 26847218
Alignment:
| Q |
471 |
tgggtgacattagtgtattttagatgaga |
499 |
Q |
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| T |
26847246 |
tgggtgacattagtgtattttagatgaga |
26847218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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