View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_22 (Length: 555)
Name: NF17833_high_22
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 1539448 - 1539776
Alignment:
| Q |
18 |
catatgactcaaaaacagcaaaattggataccgtatctataatttggtggttgatctgaatagatagaatctgatatcatattaaatttttatattacgg |
117 |
Q |
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| T |
1539448 |
catatgactcaaaaacagcaaaattggataccgtatctataatttggtggttgatctgaatagatagaatctgatatcatattaaatttttatattaccg |
1539547 |
T |
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| Q |
118 |
tttaactcattcttgcaaaaactgttgtaaagctaagatcctctttatcatatgaatcaagcatatatgactccatttttaatttggaacaaaattcaat |
217 |
Q |
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| T |
1539548 |
tttaactcattcttacaaaaactgttgtaaagctaagatcctctttatcatatgaatcaagcatatatgactccatttttaatttggaacaaaattcaat |
1539647 |
T |
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| Q |
218 |
acagaatatcaaaaccaatgatttgtaaatggcataaggaaacataccaggagtagcagcaccaacaggggcgatagacactgtaaacaaaaacaattat |
317 |
Q |
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| T |
1539648 |
acagaatatcaaaaccaatgatttgtaaatggcataaggaaacataccaggagtagcagcaccaacaggggcgatagacactgtaaacaaaaacaattat |
1539747 |
T |
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| Q |
318 |
tcatcactgtcatatcacaaacctaggat |
346 |
Q |
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| T |
1539748 |
tcatcactgtcatgtcacaaacctaggat |
1539776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 1539773 - 1539845
Alignment:
| Q |
469 |
ggattagaagtgtcctggtgtcagacacacggactgacgccgagacatgtgattacactaaattgtgtctgtg |
541 |
Q |
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| T |
1539773 |
ggattagaagtgtcccagtgtcagacacacggaccgacgccgagacatgtgattacactaaattgtgtctgtg |
1539845 |
T |
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