View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_24 (Length: 543)
Name: NF17833_high_24
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 53346220 - 53345702
Alignment:
| Q |
1 |
ccacgggtaatattttgtggaaattatagcctataatgtaaataattgtatttgctattatgtaactgtaaagttgctggttatcacgagacacgaaagt |
100 |
Q |
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| T |
53346220 |
ccacgggtaatattttgtggaaattatagcctataatgtaaataattgtatgtgctattatgtaactgtaaagttgctggttatcacgagacacgaaagt |
53346121 |
T |
|
| Q |
101 |
atatacagaaagaacnnnnnnncttcaatctattaccagttggtcttgaaatagactagtaatgaagtatgaaaattcttgtctctaacaatta----ta |
196 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53346120 |
atatacagaaagaacaaaaaaacttcaatctattaccagttggtcttgaaatagactagtaatgaagtatgaaaattcttgtctctaacaattaattata |
53346021 |
T |
|
| Q |
197 |
aaggttttagcactgtaaggactacacgtgatgtttaatctgaaagtaaaattaaattcattatcatgcattagctatattttcttgtgttttgctaccg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53346020 |
aaggttttagcactgtaaggactacacgtgatgtttaatctgaaa----------attcattatcatgcattagctatattttcttgtgttttgctaccg |
53345931 |
T |
|
| Q |
297 |
atggatcaacccgtggccgggtggggtaggatgaaaatttcaacctatatttgtaattcaacccactccatgtctccatcccattttagacatccggtaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53345930 |
atggatcaacccgtggccgggtggggtaggatgaaaatttcaacctatatttgtaattcaacccactccatgtctccatcccattttagacatccggtaa |
53345831 |
T |
|
| Q |
397 |
tcatattgtttgctatgtttgcgtctataactctaaaaaattattgttgtctccataataattattctacgttgctggagtaagggggaagagaggcaga |
496 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
53345830 |
tcatactgtttgctatgtttgcgtctataactctaaaaaattattgttgtctccataataattaatcttcgttgctggagtaagggggaagagagacaga |
53345731 |
T |
|
| Q |
497 |
tataatcacttttaattgatatactctct |
525 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
53345730 |
tataatcacttttaattgatatactctct |
53345702 |
T |
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