View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_27 (Length: 513)
Name: NF17833_high_27
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_27 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0190 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0750 (1 HSPs) |
| | |
|
| [»] scaffold0124 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 93 - 504
Target Start/End: Complemental strand, 48117604 - 48117193
Alignment:
| Q |
93 |
cttgggacaagaagaaatatgagaagacatgtacttgaggtacacggattaaggatatatcatatcatatatatctgcaaatgagattttatatgtgtgt |
192 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48117604 |
cttgggacaagaagaaagatgagaaggcatgtacttgaggtacacggattaaggatatatcatatcatatatatctgcaaatgagattttatatgtgtgt |
48117505 |
T |
|
| Q |
193 |
ggtttcattgaaattgcaacatgttatagttttgattataagtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaagga |
292 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48117504 |
ggtatcattgaaattgcaacatgttatagttttgattataagtttggcataaatatgttccatttaaggtctcaatttttgcttggaggttgacaaagga |
48117405 |
T |
|
| Q |
293 |
tcggttgcctaccaggtccaatctgatgcatcacggtattctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48117404 |
tcggttgcctaccaggtccaatctgatgcatcgcggtattctcttagatgcggatgcgggttgtttgttagggtgcggccaacttgagacgtctcaacat |
48117305 |
T |
|
| Q |
393 |
ttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttcc |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48117304 |
ttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcattttc |
48117205 |
T |
|
| Q |
493 |
ttcatttctctc |
504 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
48117204 |
ttcagttctctc |
48117193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 234 - 504
Target Start/End: Original strand, 30821782 - 30822052
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| ||||||||| ||||| |||| || | ||||||| | || ||||||||||| || ||||||| |
|
|
| T |
30821782 |
gtttggcataaacaggttccacttaaggtctcaatatttgcttggcggttggtaaaaaataagctgcctactcgatcaaatctgatgcagcatggtattc |
30821881 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
| | || | ||||||||| |||||||| | ||||| || | |||| ||||| |||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
30821882 |
tttcagcttcggatgcggggtgtttgttgagatgcggacacatcgagacttctcagcatttatttacctcttgtagtttttatggcactttgtggagtca |
30821981 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||| ||||||||||||||||| |||||||| |||||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
30821982 |
ggtacggtcttggcttggtgtctcaggccccgaccccattattgtctcagatcacttccttcagttctctc |
30822052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 496
Target Start/End: Complemental strand, 38295692 - 38295581
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcag |
483 |
Q |
| |
|
|||||||||||||| || ||| ||| ||||||||||||| | ||| | ||||||||||||||||||| || |||||||||||||| || ||| |||| |
|
|
| T |
38295692 |
tctcaacatttattcatatct-gtgatttttatggcactctttggcataaggtgcggtcttggcttggagtctcaggcccagacccttttcatgtctcag |
38295594 |
T |
|
| Q |
484 |
atcatttccttca |
496 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
38295593 |
atcatttctttca |
38295581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 48117681 - 48117633
Alignment:
| Q |
19 |
atccaatcaggtgt---gtacgtgtatatacaatagaaaatatttatgg |
64 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
48117681 |
atccaatcaggtgttatgtacatgtatatacaatagaaaatatttatgg |
48117633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 22877510 - 22877562
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| |||||||| | |||||||| || |||||||||||||||||||| |
|
|
| T |
22877510 |
gtttggcacaaacatgtttcccttaaggtgtctatttttgcttggaggttgat |
22877562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 40688162 - 40688110
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| ||||| || || |||||||| || |||||||||||||||||||| |
|
|
| T |
40688162 |
gtttggcacaaacaggttccccttaaggtgtctatttttgcttggaggttgat |
40688110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 233 - 504
Target Start/End: Complemental strand, 30426535 - 30426264
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtatt |
332 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| ||| ||| |
|
|
| T |
30426535 |
agtttggcataaacatgttccacttaaggtctcaatttttgcttggaggttggtaaaggatcggttgcctaccaggtcaaacctgatgcatcgcggaatt |
30426436 |
T |
|
| Q |
333 |
ctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
432 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30426435 |
ctcttagatgcggatgcgggttgtttgttagggtgcggccaacttgagacgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
30426336 |
T |
|
| Q |
433 |
aggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30426335 |
aggtgcggtcttggcttggtgtttcaggcctagaccccattactgtatcagatcatttccttcagttctctc |
30426264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 233 - 441
Target Start/End: Original strand, 5802159 - 5802368
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatc-tgatgcatcacggtat |
331 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||| ||||| || | ||||||||| |||||| |
|
|
| T |
5802159 |
agtttggcataaacatgttccacttaaggtctcaatttttgcttggaggttggtaaaaaataggttgcctacaaggtcaaaacctgatgcatcgcggtat |
5802258 |
T |
|
| Q |
332 |
tctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgt |
431 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5802259 |
cctcttagattcggatgcgagttgtttgttaggttgcggccaaatcgagacttctcagcatttatttatttcttgtggtttttatggcactttgtggttt |
5802358 |
T |
|
| Q |
432 |
caggtgcggt |
441 |
Q |
| |
|
||||||||| |
|
|
| T |
5802359 |
aaggtgcggt |
5802368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 234 - 503
Target Start/End: Complemental strand, 35029317 - 35029048
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||| ||||||||||||| ||||| |||||| || || |||| ||| |
|
|
| T |
35029317 |
gtttggcataaacatgttccacttaaggtttctatttttgcttggaggttggtaaagaatcggttgcctacaaggtcaaatctgctgggtcgcggtgttc |
35029218 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
| || || ||||||||| ||||||||||||||||||| | |||| |||||||| |||||||||||||||| ||| |||||||||||||||| | | |
|
|
| T |
35029217 |
ttttgcctgcggatgcgggctgtttgttagggtgcggccttgtcgagacatctcaacacttatttatttcttgtgatttctatggcactttgtggtttaa |
35029118 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctct |
503 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| |||| ||| |||| |||||| |||| |||||| |
|
|
| T |
35029117 |
ggtgcggtcttggcttggtgtctcaggcccataccacattcatgttccagaacatttctttcagttctct |
35029048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 234 - 503
Target Start/End: Complemental strand, 12331951 - 12331682
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||| || | ||||||| | || ||||||||||| | ||||||| |
|
|
| T |
12331951 |
gtttggcacaaacatgttccacttaaggtctcaatttttgcttggtggttggtaaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattc |
12331852 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
||| || | || |||||||||||||||||| || ||||| | |||| ||||| |||||||||| |||||| |||||||||||||||| ||| |||| |
|
|
| T |
12331851 |
tctcagcttcgggtgcgggttgtttgttaggctgtggccacatcgagacttctcagcatttatttacatcttgtcgtttttatggcactttatggagtca |
12331752 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctct |
503 |
Q |
| |
|
|||| |||| ||||||||||| |||||||| |||||||||| ||| |||||||| |||||||| |||||| |
|
|
| T |
12331751 |
ggtgaggtcctggcttggtgtctcaggccccgaccccattattgtctcagatcacttccttcagttctct |
12331682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 3913256 - 3913341
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccc |
469 |
Q |
| |
|
||||| |||||||| ||| |||||| ||||||||| || ||| | | |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
3913256 |
tctcagcatttattcattacttgtgacttttatggctctctgtagcataaggtgcggtcttggcttggtgtctcaggaccagaccc |
3913341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 38140565 - 38140650
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccc |
469 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||| || |||| | ||||||||||||| |||||||| ||||| ||| |||| |
|
|
| T |
38140565 |
tctcagcatttattcatttcttgtgatttttatggctctcagtggcataaggtgcggtcttgacttggtgtctcaggaccaaaccc |
38140650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 235 - 504
Target Start/End: Complemental strand, 36685938 - 36685669
Alignment:
| Q |
235 |
tttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattct |
334 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| || |||||||||| ||| ||||| |
|
|
| T |
36685938 |
tttggcataaacatgttccacttaaggtcttaatttttgcttggatgttggtaaaggatcggttgcctaccaggtcaaacctgatgcatcgcggaattct |
36685839 |
T |
|
| Q |
335 |
cttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcag |
434 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36685838 |
cttagatgcggatgcgagttgtttgttagggtgcggccaacttgagacgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcag |
36685739 |
T |
|
| Q |
435 |
gtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36685738 |
gtgcggtcttgacttggtgtttcaggcccagaccccattactgtatcagatcatttccttcagttctctc |
36685669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 13889453 - 13889526
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttc |
457 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||| ||| |||||||||||||||||| ||||| |
|
|
| T |
13889453 |
tctcaacatttatttttatcttgtggtttttatggctctttatggcaggcggtgcggtcttggcttggggtttc |
13889526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 45270186 - 45270104
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccaga |
466 |
Q |
| |
|
||||| |||||||| || ||||||| || |||||| |||||||| || ||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
45270186 |
tctcagcatttattcatctcttgtgattattatggttgtttgtggtctcgggttcggtcttggcttggtgtctcaggtccaga |
45270104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 45270336 - 45270286
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttg |
284 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
45270336 |
gtttggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg |
45270286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 41150108 - 41150059
Alignment:
| Q |
235 |
tttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttg |
284 |
Q |
| |
|
||||||| || ||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
41150108 |
tttggcacaaccatgttccgcttaaggtctctatttttgcttggaggttg |
41150059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 233 - 504
Target Start/End: Complemental strand, 26146311 - 26146046
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtatt |
332 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
26146311 |
agtttggcataaacatgctccacttaaggtctcaatttttgcttggaggttggtaaaggatcggttgcctaccaggtcaaacttgatgcatcgcggtatt |
26146212 |
T |
|
| Q |
333 |
ctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
432 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26146211 |
ctcttagatg------cgagttgtttgttagggtgtggccaacttgagacgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
26146118 |
T |
|
| Q |
433 |
aggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26146117 |
aggtacggtcctggcttggtgtttcaggcccagacctcattactgtatcagatcatttccttcagttctctc |
26146046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 233 - 504
Target Start/End: Complemental strand, 43310355 - 43310086
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtatt |
332 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| || |||||||||| ||||| || | |||||||| ||||||| |
|
|
| T |
43310355 |
agtttggcataaacatgttccacttaaggtctcaatttttacttggaggttggtaaagaataggttgcctacaaggtcaaacccgatgcatcgcggtatt |
43310256 |
T |
|
| Q |
333 |
ctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
432 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| | |||| |||||| |||||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
43310255 |
ctcttagattcggatgcgggttgtttgttaggatgcggccatatcgagacgtctcagcatttatt--tgtcttatggtttttatggcactttgtggtgta |
43310158 |
T |
|
| Q |
433 |
aggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43310157 |
aggtgcggtcttggcttggtgtctcaggcccagacaccattactgtatcagatcatttccttcagttctctc |
43310086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 234 - 504
Target Start/End: Complemental strand, 10688658 - 10688388
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||||||| ||||| ||||| || |||||||||| | || ||||||||||||| | |||| | |
|
|
| T |
10688658 |
gtttggcataaacatgttctacttaaggtctcaatatttgcttggcggttggtaaagaataggttgcctacacgatcaaatctgatgcatcgctgtatcc |
10688559 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||| ||||||||| | | |
|
|
| T |
10688558 |
tcttagcttcggacgcgggttgtttgttagggtgcggccaaatcgagacttctcagcatttatttatttcttgtggtttttatggctctttgtggtttaa |
10688459 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
10688458 |
ggtgcggtcttggcttggtgtctcaggcccagaccccattgttgtctcagatcacttccttcagttctctc |
10688388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 496
Target Start/End: Original strand, 43724187 - 43724447
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
|||||||| || ||||| || |||||||||||||||||||||||||||||||| ||| |||| |||||| ||| |||||| |||||| ||||| |
|
|
| T |
43724187 |
gtttggcacaatcatgttccgcttaaggtctcaatttttgcttggaggttgatgaagaatcgtttgcctttaaggcaaaatctggtgcatcgtggtat-- |
43724284 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
||| || | ||| ||||||||||||||||||| | | ||| ||||| |||||||| |||||||||| || ||||||||| ||||||| || |
|
|
| T |
43724285 |
cctttgacaccgctgctggttgtttgttagggtgcgacgctttagagtcttctcagcatttattcatttcttgtgattattatggcacgttgtggtctcg |
43724384 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttca |
496 |
Q |
| |
|
||| | |||||| |||||| | ||||| ||||| ||||||| ||| ||||| || |||||||| |
|
|
| T |
43724385 |
ggttcagtcttgacttggtatctcaggtccagatcccattattgtttcagagcacttccttca |
43724447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 6727822 - 6727874
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| ||||| || || |||||||| || |||||||||||||||||||| |
|
|
| T |
6727822 |
gtttggcacaaacaggttccccttaaggtgtctatttttgcttggaggttgat |
6727874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 13415778 - 13415726
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| |||||||| || |||||||| || |||||| ||||||||||||| |
|
|
| T |
13415778 |
gtttggcacaaacatgttccccttaaggtgtctattttttcttggaggttgat |
13415726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 233 - 504
Target Start/End: Original strand, 19548528 - 19548799
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtatt |
332 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||| || || ||||| |||||| |
|
|
| T |
19548528 |
agtttggcataaacatgttccacttaaggtctcaatttttgcttggaggttggtaataaataggttgcctacaaggtcaaacctttcgcatcgcggtatc |
19548627 |
T |
|
| Q |
333 |
ctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
432 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19548628 |
ctcttagattcggattcgggttgtttgttagggtgcggccaattcgagacttctcagcatttatttatttcttgtggtttttatggcactttgtggtttc |
19548727 |
T |
|
| Q |
433 |
aggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
19548728 |
aggtgcggtcttgacttggtgtctcaggcccaaaccccattactgtctcagatcatttccttcagttctctc |
19548799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 234 - 504
Target Start/End: Original strand, 52251169 - 52251439
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||| ||||||||||||| ||||| |||||| ||| || |||| ||| |
|
|
| T |
52251169 |
gtttggcataaacatgttccacttaaggtttccatttttgcttggaggttggtaaagaatcggttgcctacaaggtcaaatctgctgcgtcgcggtgttc |
52251268 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
| || | || ||||| | |||||||||||||||||||| | |||| ||||| || |||||||||||||||| ||| |||||||||||||||| | | |
|
|
| T |
52251269 |
ttttggttgcagatgcagactgtttgttagggtgcggccacgtcgagacatctcagcacttatttatttcttgtgatttctatggcactttgtggtttaa |
52251368 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||| |||| ||||||| |
|
|
| T |
52251369 |
ggtgcggtcttggcttggtgtctcaggcccataccccattcatgtttcagatcatttctttcagttctctc |
52251439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 234 - 504
Target Start/End: Complemental strand, 17700331 - 17700061
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| ||||||||| ||||| |||| || | ||||||| | || ||||||||||| | ||||||| |
|
|
| T |
17700331 |
gtttggcataaacaggttccacttaaggtctcaatatttgcttggcggttggtaaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattc |
17700232 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
| | || | ||||||||| |||||||| || |||| || | |||| ||||| |||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
17700231 |
tttcagcttcggatgcggggtgtttgttgggacgcggacacatcgagacttctcagcatttatttacctcttgtagtttttatggcactttgtggagtca |
17700132 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
17700131 |
ggtgcggtcttggcttggtgtctcaggccccgaccccattattgtctcagatcacttccttcagttctctc |
17700061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 384 - 496
Target Start/End: Original strand, 9109425 - 9109537
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcag |
483 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||| | ||||||| |||||| ||| ||||||||||||||||||| || |||||| ||| ||| |||| |
|
|
| T |
9109425 |
tctcagcatttattcatttcttgtgatttttatggatcgttgtggtctcaggttcgggcttggcttggtgtttcaggacccgacccctttattgtttcag |
9109524 |
T |
|
| Q |
484 |
atcatttccttca |
496 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
9109525 |
atcattttcttca |
9109537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 465
Target Start/End: Original strand, 30616800 - 30616881
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccag |
465 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||| || ||||| | ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
30616800 |
tctcagcatttatttatttcttatgatttttatggctctctgtggcataaggtgaggtcttggcttggtgtctcaggaccag |
30616881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 16672930 - 16672977
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggagg |
281 |
Q |
| |
|
||||||||||| ||| | || ||||||||||||||||||||||||||| |
|
|
| T |
16672930 |
gtttggcataatcatattccgcttaaggtctcaatttttgcttggagg |
16672977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 48929672 - 48929586
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagacccc |
470 |
Q |
| |
|
||||| |||||||| || | ||||| || |||||| ||||||||| || ||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
48929672 |
tctcagcatttattcatctattgtgattattatggttctttgtggtctcgggttcggtcttggcttggtgcctcaggtccagacccc |
48929586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 6985997 - 6985945
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| |||||||| || || ||||| || |||||||||||||||||||| |
|
|
| T |
6985997 |
gtttggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttgat |
6985945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 8130046 - 8129994
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| |||||||| || || ||||| || |||||||||||||||||||| |
|
|
| T |
8130046 |
gtttggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttgat |
8129994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 16673082 - 16673186
Alignment:
| Q |
386 |
tcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagat |
485 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| | ||||||| || || ||| | |||||||||||||| || || || ||| ||| ||| || ||| |
|
|
| T |
16673082 |
tcaacatttattcatttcttgtgatttttatggttcattgtggtctcttgttcgggcgtggcttggtgtttctggacccgatccctttattgtttccgat |
16673181 |
T |
|
| Q |
486 |
cattt |
490 |
Q |
| |
|
||||| |
|
|
| T |
16673182 |
cattt |
16673186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 233 - 504
Target Start/End: Original strand, 6995024 - 6995295
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtatt |
332 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||| |||||||||| ||||| || |||||||||| |||||| |
|
|
| T |
6995024 |
agtttggcataaacatgttccacttaaggtctcaatttttgcttagaggttggtaaaagataggttgcctacaaggtcaaacctgatgcatcgcggtatc |
6995123 |
T |
|
| Q |
333 |
ctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
432 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||||| | | |||| ||||| ||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
6995124 |
ctcttagattcggctgcaggttgtttgttagggtgcggcccaatcgagacttctcagcatttatttatttcttgtgatttttgtggcactttgtggttta |
6995223 |
T |
|
| Q |
433 |
aggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
|| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6995224 |
agatgcggtattggcttggtgtctcagacccagaccccattactgtatcagatcatttccttcagttctctc |
6995295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 34434359 - 34434309
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttg |
284 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||| |||||||||||||||||| |
|
|
| T |
34434359 |
gtttggcataaccatgttccgcttaaagtctctatttttgcttggaggttg |
34434309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 233 - 504
Target Start/End: Original strand, 64683 - 64954
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtatt |
332 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||| || |||||||||| ||||| |||||||||| || || | || |
|
|
| T |
64683 |
agtttggcataaacatgttccacttaaggtctcaattttcgtttggaggttggtaaagaataggttgcctacaaggtcaaatctgatgcgtcgcgatgtt |
64782 |
T |
|
| Q |
333 |
ctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
432 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
64783 |
ctcttggattcggatgcgagttgtttgttaggatgcggccacgtcgagacatctcaacatttatttatttcttgtggtttttatggcactttgtggttta |
64882 |
T |
|
| Q |
433 |
aggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||| || |||| ||||||| |
|
|
| T |
64883 |
aggtgcggtcttgtcttggtgtctcaggtccagaccccattactgtttcagatcatctctttcagttctctc |
64954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 233 - 504
Target Start/End: Complemental strand, 133949 - 133678
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtatt |
332 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||| || |||||||||| ||||| |||||||||| || || | || |
|
|
| T |
133949 |
agtttggcataaacatgttccacttaaggtctcaattttcgtttggaggttggtaaagaataggttgcctacaaggtcaaatctgatgcgtcgcgatgtt |
133850 |
T |
|
| Q |
333 |
ctcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtc |
432 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
133849 |
ctcttggattcggatgcgagttgtttgttaggatgcggccacgtcgagacatctcaacatttatttatttcttgtggtttttatggcactttgtggttta |
133750 |
T |
|
| Q |
433 |
aggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||| || |||| ||||||| |
|
|
| T |
133749 |
aggtgcggtcttgtcttggtgtctcaggtccagaccccattactgtttcagatcatctctttcagttctctc |
133678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 234 - 504
Target Start/End: Original strand, 25019361 - 25019631
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||| || |||||||||| | || ||||||||||||| |||||| | |
|
|
| T |
25019361 |
gtttggcataaacatgttccacttaaggtctcaatatttgcttgacggttggtaaaaaattggttgcctacacgatcaaatctgatgcatcgcggtatcc |
25019460 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
|||||| | | | ||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
25019461 |
tcttagcttcgaacgcgggttgtttgttagggtgcggccaaatcgagacttctcagcatttatttatttcttgtggtttttatggcactttgtggtttaa |
25019560 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| ||| ||| |||| |||||||| ||||||| |
|
|
| T |
25019561 |
ggtgcggtcttggcttggtgtctcatgcccagaccccattattgtctcaaatcacttccttcagttctctc |
25019631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 234 - 504
Target Start/End: Original strand, 30573387 - 30573657
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| |||| |||| ||||| |||| || |||| || | | || ||||||||||| | |||||| | |
|
|
| T |
30573387 |
gtttggcataaacatgttccccttaaggtctcaatatttgtttggcggttggtaaaaaataagttgtctgcacgatcaaatctgatgcagcgcggtatcc |
30573486 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
||| || | ||| || ||||||||| |||||||||||||| | |||| ||||| |||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
30573487 |
tctcagcttcggacgcaggttgtttgctagggtgcggccaaatcgagacttctcagcatttatttatttcgtgtagtttttatggcactttgtggagtca |
30573586 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
30573587 |
ggtgcggtcttggcttggtgtcttaggccctgaccccattattgtctcagatcacttccttcagttctctc |
30573657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 234 - 504
Target Start/End: Original strand, 41805802 - 41806069
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| ||||||||| ||||| |||| || ||||||||| | || ||||||||||| | ||||||| |
|
|
| T |
41805802 |
gtttggcataaatatgttccactcaaggtctcaatatttgcttggcggttggtaaaaaataagttgcctacacgatcaaatctgatgcagcgtggtattc |
41805901 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
||| || | ||||||||||||||||||| | ||| ||| | |||| ||||||||||||||||| |||||| |||||||||||||||||||| || | |
|
|
| T |
41805902 |
tctcagcttcggatgcgggttgtttgttacg---cggacaaatcgagacttctcaacatttatttatctcttgtagtttttatggcactttgtggagtta |
41805998 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
|||||||||| |||||||||| |||| ||| |||||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
41805999 |
ggtgcggtctgggcttggtgtctcagtccccgaccccattattgtctcagatcacttccttcagttctctc |
41806069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 234 - 504
Target Start/End: Original strand, 9724726 - 9724996
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| || | ||||||| | || ||||||||||| ||||||| |
|
|
| T |
9724726 |
gtttggcataaacatgttccacttaaggtctcaatttttgcttggcggttggtaaaaaataagctgcctactcgatcaaatctgatgcagtgtggtattc |
9724825 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
||| || | ||||||||||||||||||||| |||||||| | |||| |||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
9724826 |
tctcagcttcggatgcgggttgtttgttaggatgcggccacatcgagacttctcaacatttatttacctcttgtagtttttatggcactttgtggagtca |
9724925 |
T |
|
| Q |
434 |
ggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
|||| |||| ||||||||||| |||||||| |||||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
9724926 |
ggtgaggtcctggcttggtgtctcaggccccgaccccattattgtctcagatcacttccttcagttctctc |
9724996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 26413182 - 26413267
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccc |
469 |
Q |
| |
|
|||||||||||||| ||| | |||| |||||||||| |||||||| | |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
26413182 |
tctcaacatttattcattacgtgtgatttttatggctctttgtggcataaggtgcggtcttggcttggtgtctcaggaccagaccc |
26413267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 21077220 - 21077149
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctac |
304 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||||||| ||||||||| || | ||||||||||||| |
|
|
| T |
21077220 |
agtttggcataaacatgtttcactcaaagtctcaatttttgcatggaggttgttacaaaatcggttgcctac |
21077149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 496
Target Start/End: Complemental strand, 21077063 - 21076957
Alignment:
| Q |
390 |
catttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccccattactgtatcagatcatt |
489 |
Q |
| |
|
|||||||| |||||||| | ||||||||||| | ||||| |||| ||||||||||||||||| ||||| ||| |||| ||||||| |||||||| | |
|
|
| T |
21077063 |
catttattcatttcttgcgatttttatggcattctgtggcagaaggtacggtcttggcttggtgtctcaggtccaaacccttttactgtttcagatcact |
21076964 |
T |
|
| Q |
490 |
tccttca |
496 |
Q |
| |
|
|| |||| |
|
|
| T |
21076963 |
tctttca |
21076957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 4298354 - 4298401
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggagg |
281 |
Q |
| |
|
||||||||||| ||| | || ||||||||||||||||||||||||||| |
|
|
| T |
4298354 |
gtttggcataatcatattccgcttaaggtctcaatttttgcttggagg |
4298401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 35837304 - 35837252
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| ||||| || || |||||||| || |||||||||||||||||||| |
|
|
| T |
35837304 |
gtttggcacaaacaggttccgcttaaggtgtctatttttgcttggaggttgat |
35837252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 345 - 504
Target Start/End: Complemental strand, 366882 - 366723
Alignment:
| Q |
345 |
gatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtctt |
444 |
Q |
| |
|
|||||||||||||||||||||||| | ||| | |||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
366882 |
gatgcgggttgtttgttagggtgcagacaaatcgagacttctcagcatttatttatttcttgtagtttttatggcactttgtggagtcaggtgcggtctt |
366783 |
T |
|
| Q |
445 |
ggcttggtgtttcaggcccagaccccattactgtatcagatcatttccttcatttctctc |
504 |
Q |
| |
|
|||||||||| | |||||| |||||||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
366782 |
ggcttggtgtcttaggccccgaccccattattgtctcagatcacttccttcagttctctc |
366723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 234 - 443
Target Start/End: Complemental strand, 367100 - 366891
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgataaaggatcggttgcctaccaggtccaatctgatgcatcacggtattc |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| | ||| |||| || ||||||||| | || ||||||||||| | ||||||| |
|
|
| T |
367100 |
gtttggcataaacatgtcccacttaaggtctcaatatttgcttggcgattggtaaaaaataagttgcctacacgatcaaatctgatgcaacgtggtattc |
367001 |
T |
|
| Q |
334 |
tcttagatgtggatgcgggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca |
433 |
Q |
| |
|
||| || | |||||||||||||||| ||||||| | ||| | |||| ||||| |||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
367000 |
tctcagcttcagatgcgggttgtttgtcagggtgcagacaaatcgagacttctcagcatttatttatttcttgtagtttttatggcactttgtggagtca |
366901 |
T |
|
| Q |
434 |
ggtgcggtct |
443 |
Q |
| |
|
||||||||| |
|
|
| T |
366900 |
agtgcggtct |
366891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 26627 - 26482
Alignment:
| Q |
351 |
ggttgtttgttagggtgcggccaacttgagatgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttg |
450 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||| |||||||| |||||||||| |||||||||| | ||||||| |||||| ||| ||||||||| |
|
|
| T |
26627 |
ggttgtttgttagggtgcggagctgtagagacttctcagcatttattcatttcttgtgatttttatggctcgttgtggtctcaggttcgggcttggcttg |
26528 |
T |
|
| Q |
451 |
gtgtttcaggcccagaccccattactgtatcagatcatttccttca |
496 |
Q |
| |
|
| |||||||| || |||||| ||| ||| ||||||||||||||||| |
|
|
| T |
26527 |
gagtttcaggtcccgacccctttattgtttcagatcatttccttca |
26482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 3796 - 3881
Alignment:
| Q |
384 |
tctcaacatttatttatttcttgtggtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgtttcaggcccagaccc |
469 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||| ||| | ||| ||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
3796 |
tctcaacatttattcatctcttgtgatttttatggaactctttggcatcaggtgcgctcttggcttggagtctcaggcccagaccc |
3881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 27878 - 27834
Alignment:
| Q |
233 |
agtttggcataaacatgtaccacttaaggtctcaatttttgcttg |
277 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27878 |
agtttggcataaacatgctccacttaaggtctcaatttttgcttg |
27834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0750 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0750
Description:
Target: scaffold0750; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 6146 - 6094
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| |||||||| || || ||||| || |||||||||||||||||||| |
|
|
| T |
6146 |
gtttggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttgat |
6094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0124 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0124
Description:
Target: scaffold0124; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 22508 - 22456
Alignment:
| Q |
234 |
gtttggcataaacatgtaccacttaaggtctcaatttttgcttggaggttgat |
286 |
Q |
| |
|
|||||||| |||||||| || || ||||| || |||||||||||||||||||| |
|
|
| T |
22508 |
gtttggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttgat |
22456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University