View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_30 (Length: 480)
Name: NF17833_high_30
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 3 - 468
Target Start/End: Original strand, 34908602 - 34909067
Alignment:
| Q |
3 |
ggatcattacatgagagtgatgcaccgcttgagtaaatgtttccaacaagcccagatggaggtgaactgaacaagcttgattgacttaaagcagcagtct |
102 |
Q |
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| T |
34908602 |
ggatcattacatgagagtgatgcaccgcttgagtaaatgtttccaacaagcccagatggaggtgaactgaacaagcttgattgacttaaagcagcagtct |
34908701 |
T |
|
| Q |
103 |
gcccaatgggagcggtattctgaccgaaatcagaagcagactgtgcatttgtaggggctgcagagctaaataattgggatggttgagtgttgcgaaaact |
202 |
Q |
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| T |
34908702 |
gcccaatgggagcggtattctgaccgaaatcagaagcagactgtgcatttgtaggggctgcagagctaaataattgggatggttgagtgttgcgaaaact |
34908801 |
T |
|
| Q |
203 |
gcttgtgaaaaatggtgaagatgtacctggagcagcagtattaaacagggatgcagatggtctaaatgcctgcgacaaagaattgtcaccaaacagaggt |
302 |
Q |
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| T |
34908802 |
gcttgtgaaaaatggtgcagatgtacctcgagcagcagtattaaacagggatgcagatggtctaaatgcctgcgacgaagaattgtcaccaaacagaggt |
34908901 |
T |
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| Q |
303 |
gtggatgagggaaaagtagaaggtgctgctgctgatgttgataaaccaaaagccgatgaactgaaggcaggagctgatgttccaaatccagaagaaaatg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908902 |
gtggatgagggaaaagtagaaggtgctgctgctgatgtcgataaaccaaaagccgatgaactgaaggcaggagctgatgttccaaatccagaagaaaatg |
34909001 |
T |
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| Q |
403 |
tagaagtattcagtacaaatgggtaagaattaggtgttgtgctattggaaagattggatgatgatg |
468 |
Q |
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| T |
34909002 |
tagaagtattcggtacaaatgggtaagaattaggtgttgtgctattggaaagattggatgatgatg |
34909067 |
T |
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