View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_32 (Length: 476)
Name: NF17833_high_32
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 36167559 - 36167112
Alignment:
| Q |
1 |
tcaaatcaaattaaactaaccaacattctatttagagtttagttttcatacacggttattaaaagaaaattcactcattcagtagcacattgcaatcgat |
100 |
Q |
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| T |
36167559 |
tcaaatcaaattaaactaaccaacattctatttagagtttagttttcatacacggttattaaaagaaaattcactcattcagtagaacattgcaatcgat |
36167460 |
T |
|
| Q |
101 |
cgtacgtatcaatttattattctttttaacagacagagtaaccaacttcttttcatttatagtatatgctacattatatgtaaataatttaagtaaaact |
200 |
Q |
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| T |
36167459 |
cgtacgtatcaatttattattctttttaacagacagagtaaccaacttcttttcatttatagtatatgctacattatatgtaaataatttaagtaaaact |
36167360 |
T |
|
| Q |
201 |
ttggaggttggccataccaataacttgcaatgaattctaagaatagtaaattttagaatttataatcactcaaagtaaattatggataatattgtaaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36167359 |
ttggaggttggccataccaataacttgcaatgaattctaagaatagtaaattttagaatttataatcactcaaagtaaattatggatagtattgtaaccg |
36167260 |
T |
|
| Q |
301 |
cttgactttatgtaaataaagggttatctatgtttctatctcaattcatatttcatatatcataattcatctccttcctgaaattgcttctactgaattg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36167259 |
cttgactttatgtaaataaagggttatctatgtttctatctcaattcatatttcatatatcataattcatctccttcctgaaattgcttctactgcattg |
36167160 |
T |
|
| Q |
401 |
tttccataaaaaagaggagtagatatgaagaataatattcatatatat |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36167159 |
tttccataaaaaagaggagtagatatgaagaataatattcatatatat |
36167112 |
T |
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