View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_high_33 (Length: 465)

Name: NF17833_high_33
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_high_33
NF17833_high_33
[»] chr3 (18 HSPs)
chr3 (12-448)||(51878228-51878665)
chr3 (196-451)||(32180426-32180686)
chr3 (224-450)||(19606618-19606850)
chr3 (246-451)||(45879216-45879424)
chr3 (224-450)||(7758139-7758359)
chr3 (224-419)||(47930371-47930572)
chr3 (201-451)||(40640310-40640571)
chr3 (224-451)||(7568430-7568656)
chr3 (197-419)||(26000675-26000904)
chr3 (224-451)||(38392332-38392565)
chr3 (199-451)||(49359306-49359565)
chr3 (292-433)||(44880919-44881063)
chr3 (193-343)||(47871210-47871365)
chr3 (378-451)||(4556656-4556731)
chr3 (284-343)||(11019700-11019759)
chr3 (278-340)||(40744200-40744262)
chr3 (294-343)||(36689674-36689723)
chr3 (307-343)||(5125442-5125478)
[»] chr6 (9 HSPs)
chr6 (224-451)||(11083862-11084091)
chr6 (199-451)||(34993942-34994202)
chr6 (199-397)||(4104183-4104386)
chr6 (224-448)||(26301626-26301859)
chr6 (312-450)||(30341136-30341277)
chr6 (280-383)||(6613756-6613860)
chr6 (346-451)||(19631860-19631967)
chr6 (229-320)||(30341461-30341555)
chr6 (284-337)||(3148918-3148971)
[»] chr8 (9 HSPs)
chr8 (199-451)||(3038517-3038775)
chr8 (202-451)||(4108596-4108851)
chr8 (224-430)||(7290851-7291063)
chr8 (206-418)||(23176472-23176690)
chr8 (199-451)||(18756345-18756604)
chr8 (294-450)||(6267282-6267441)
chr8 (224-382)||(28220737-28220898)
chr8 (280-381)||(30651006-30651108)
chr8 (289-381)||(34685958-34686051)
[»] chr5 (19 HSPs)
chr5 (199-450)||(22616605-22616860)
chr5 (224-451)||(33163626-33163857)
chr5 (224-451)||(36055579-36055811)
chr5 (230-441)||(41417289-41417506)
chr5 (281-451)||(31878494-31878668)
chr5 (199-428)||(21320885-21321120)
chr5 (244-428)||(27579162-27579350)
chr5 (289-449)||(10237527-10237689)
chr5 (202-341)||(12080415-12080558)
chr5 (224-343)||(13381123-13381245)
chr5 (278-381)||(29766563-29766667)
chr5 (378-451)||(33752910-33752985)
chr5 (378-451)||(33848549-33848624)
chr5 (203-343)||(33848029-33848173)
chr5 (381-451)||(10053334-10053406)
chr5 (259-343)||(12164049-12164136)
chr5 (284-325)||(25654589-25654630)
chr5 (290-343)||(33752481-33752534)
chr5 (378-451)||(21266130-21266205)
[»] chr2 (21 HSPs)
chr2 (255-452)||(15650958-15651161)
chr2 (224-448)||(18059066-18059296)
chr2 (230-451)||(41643983-41644211)
chr2 (199-445)||(39788289-39788541)
chr2 (224-449)||(6177888-6178118)
chr2 (197-415)||(18947286-18947511)
chr2 (224-440)||(18779111-18779325)
chr2 (208-442)||(42005506-42005737)
chr2 (290-448)||(27138794-27138955)
chr2 (209-451)||(41713273-41713522)
chr2 (199-451)||(19073469-19073722)
chr2 (322-451)||(34441729-34441860)
chr2 (283-381)||(17244836-17244935)
chr2 (224-355)||(34441584-34441718)
chr2 (289-378)||(19093640-19093730)
chr2 (280-428)||(38249901-38250048)
chr2 (224-381)||(18514436-18514597)
chr2 (378-451)||(30844958-30845033)
chr2 (298-343)||(32652621-32652666)
chr2 (311-343)||(7565511-7565543)
chr2 (311-343)||(40912484-40912516)
[»] chr1 (13 HSPs)
chr1 (280-451)||(27118441-27118615)
chr1 (258-451)||(13876657-13876856)
chr1 (196-451)||(15964211-15964472)
chr1 (224-450)||(10758004-10758236)
chr1 (199-363)||(16135524-16135693)
chr1 (202-441)||(16127641-16127883)
chr1 (193-428)||(31804767-31804998)
chr1 (202-397)||(25943365-25943563)
chr1 (358-451)||(16132586-16132681)
chr1 (281-381)||(3120626-3120727)
chr1 (289-381)||(47554938-47555031)
chr1 (224-323)||(5500596-5500697)
chr1 (331-383)||(43579462-43579515)
[»] chr4 (11 HSPs)
chr4 (199-440)||(2570600-2570848)
chr4 (241-435)||(2708000-2708199)
chr4 (224-451)||(2266561-2266793)
chr4 (196-452)||(17612444-17612707)
chr4 (202-451)||(9743699-9743954)
chr4 (346-451)||(54995629-54995736)
chr4 (236-381)||(49878858-49879006)
chr4 (259-451)||(1012407-1012596)
chr4 (289-343)||(28292432-28292486)
chr4 (378-451)||(33036064-33036139)
chr4 (381-425)||(33255577-33255621)
[»] chr7 (12 HSPs)
chr7 (202-433)||(49002353-49002591)
chr7 (280-451)||(22955075-22955249)
chr7 (280-451)||(4618518-4618692)
chr7 (239-448)||(5781630-5781844)
chr7 (281-427)||(37854059-37854209)
chr7 (289-434)||(40382016-40382165)
chr7 (202-417)||(4902465-4902687)
chr7 (224-450)||(7743031-7743274)
chr7 (199-449)||(23402050-23402306)
chr7 (260-428)||(8133299-8133473)
chr7 (283-361)||(10675025-10675104)
chr7 (378-451)||(19786395-19786470)
[»] scaffold0200 (1 HSPs)
scaffold0200 (224-449)||(24522-24752)
[»] scaffold0050 (1 HSPs)
scaffold0050 (224-451)||(5701-5932)
[»] scaffold0262 (2 HSPs)
scaffold0262 (289-339)||(11445-11495)
scaffold0262 (381-448)||(12031-12100)
[»] scaffold0001 (1 HSPs)
scaffold0001 (283-343)||(65992-66052)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 448
Target Start/End: Complemental strand, 51878665 - 51878228
Alignment:
Q  12 aagaaaaagaagcgcaagatatataaactgtaaaagaactcgcacagttacaagtgtttcacttgtttataaataaattacaaacgaagaaatattaaaa 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51878665 aagaaaaagaagcgcaagatatataaactgtaaaagatctcgcacagttacaagtgtttcacttgtt-ataaataaattacaaacgaagaaatattaaaa 51878567  T
Q  112 tctatattttctcaaatttattcaaatccgttttcttgagatgtcttgaggttcgcatcattcttgtgcaagcataacctcgtgcgatgcagtcagaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51878566 tctatattttctcaaatttattcaaatccgttttcttgagatgtcttgaggttcgcatcattcttgtgcaagcataacctcgtgcgatgcagtcagaaaa 51878467  T
Q  212 ttgattctttttaaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtggatcactctaaaattaaactttatct 311  Q
    |||||| |||  |||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||    
T  51878466 ttgattttttcaaaaagttatttagtttagttaatagtatgattgccgatgtcatgtcagctactgtactggtgggtcactctaaaattaaactttacct 51878367  T
Q  312 tattacaaatcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattg 409  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  51878366 tattacaattcagtactcatacaaaatattaagagaatttcaatcttagtgcataaatgagaatctatgtttaatttttatttaatcggagacacaattg 51878267  T
Q  410 caataagtaacgatataataacacacattatggacaaat 448  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  51878266 caataagtaacaatataataacacacattatggacaaat 51878228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 196 - 451
Target Start/End: Original strand, 32180426 - 32180686
Alignment:
Q  196 cgatgcagtcagaaaattga-ttctttttaaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcac 291  Q
    ||||| |||||||||||||| ||||||  |||| |||||||||||||  |||| ||| | ||| ||||||||||| |||||||| |||   ||||| |||    
T  32180426 cgatgtagtcagaaaattgacttctttggaaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctggtggaccac 32180525  T
Q  292 tctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaattttt 390  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||||||| | |||||||||||||| || | |||||  |||||||||||||||||     
T  32180526 tctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaaggggaatttcaatcttagtgcacaaatggaaatctatgtttaattttg 32180625  T
Q  391 atttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||  | |||||||||||||||||||| |||||||| |||||| |||  ||||||||||    
T  32180626 atttaatcagggacacaattgcaataagtaaagatataatgacacacctta--gacaaatgtg 32180686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 224 - 450
Target Start/End: Original strand, 19606618 - 19606850
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||| |||| ||| |  ||||||||||||||||||||||| |||   ||||| |||||||||| ||||||||| |||||||||||    
T  19606618 aaaagttattttgtttagtcaatagtattaccgccgatgtcatgtcagctagtgtcctgctcgtggaccactctaaaactaaactttaccttattacaaa 19606717  T
Q  321 tcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagt 417  Q
    ||||| ||||||||||||||||| | |||||||||||||  || | |||||  ||||||||||||||||| |||||||  | ||||| ||||||| ||||    
T  19606718 tcagtcctcatacaaaatattaaggggaatttcaatcttggtgcacaaatggaaatctatgtttaattttgatttaataagggacacgattgcaacaagt 19606817  T
Q  418 aacgatataataacacacattatggacaaatgt 450  Q
    || |||||||| |||||| ||||||| ||||||    
T  19606818 aaagatataatgacacaccttatggaaaaatgt 19606850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 246 - 451
Target Start/End: Original strand, 45879216 - 45879424
Alignment:
Q  246 taatatgattgccgatgtcatgtcagctagtgtactggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-g 344  Q
    |||||| ||||| |||||||||||||||||||| |||||||| |||| ||||  ||||||||| |||||||||||||||| |||||||||||||| || |    
T  45879216 taatataattgctgatgtcatgtcagctagtgtcctggtggaccactttaaagctaaactttaccttattacaaatcagtcctcatacaaaatataaagg 45879315  T
Q  345 agaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaattgcaataagtaacgatataataacacacattatgg 442  Q
     |||||||||| ||| || | |||||||||||||||||||||||| ||||||| ||  | |||||| |||||||||| |||||||  |||||| ||||||    
T  45879316 ggaatttcaatgttagtgcacaaatgagaatctatgtttaattttgatttaatcaggaaaacaatttcaataagtaaagatataacgacacaccttatgg 45879415  T
Q  443 acaaatgtg 451  Q
     ||||||||    
T  45879416 gcaaatgtg 45879424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 224 - 450
Target Start/End: Original strand, 7758139 - 7758359
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtggatcactctaaaattaaactttatcttattacaaatca 323  Q
    |||| |||||||||||||| |||| ||| ||||||||| |||||||||||||||        || |||||||||| ||| ||||||||| ||||||||||    
T  7758139 aaaagttattttgtttagtcaatagtataattgccgatatcatgtcagctagtg--------gagcactctaaaactaagctttatctttttacaaatca 7758230  T
Q  324 gtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacg 421  Q
    ||  ||||||||||||| | | |||||||||||||| || | |||||||||||||||||||||||| |||||||  | |||||||||||||||||||| |    
T  7758231 gtcttcatacaaaatataaggggaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaattagggacacaattgcaataagtaaag 7758330  T
Q  422 atataataacacacattatggacaaatgt 450  Q
    ||||||| || ||| |||||| |||||||    
T  7758331 atataatgacgcaccttatgggcaaatgt 7758359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 224 - 419
Target Start/End: Original strand, 47930371 - 47930572
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||||||||||||||||| ||||| ||| | |||||||||||| |||| |||||| |||   ||||| |||||||||| ||| |||||  ||||||||||    
T  47930371 aaaaattattttgtttagctaatagtataactgccgatgtcatatcagttagtgtcctgttagtggaccactctaaaactaagctttactttattacaaa 47930470  T
Q  321 tcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatga--gacacaattgcaataagt 417  Q
    |||||  | ||||||||||||||| | ||||||||||||| || | |||||||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  47930471 tcagtcattatacaaaatattaaggggaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaatgagggacacaattgcaataagt 47930570  T
Q  418 aa 419  Q
    ||    
T  47930571 aa 47930572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 201 - 451
Target Start/End: Original strand, 40640310 - 40640571
Alignment:
Q  201 cagtcagaaaattgattctttttaaaaa--ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactcta 295  Q
    |||||| |||||||| | ||||| ||||  |||||||||||||| |||| ||| | |||| ||||||||||| || |||   | ||||| ||||||||||    
T  40640310 cagtcaaaaaattgactttttttgaaaaagttattttgtttagtcaatagtataagtgcctatgtcatgtcaactggtgccctgctggtagatcactcta 40640409  T
Q  296 aaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttattt 394  Q
    ||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||| || | |||||||||| ||| ||||||||| ||||    
T  40640410 aaactaaactttattttattacaaatcagtcctcatacaaaatattaaggagaatttcaattttagtgcacaaatgagaatatatctttaattttgattt 40640509  T
Q  395 aatga--gacacaatt---gcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||| |  |||||||||   |||||||||||  ||||||| |||||  |||||| ||||||||    
T  40640510 aatcaaggacacaattgcagcaataagtaaaaatataatgacacatcttatgggcaaatgtg 40640571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 451
Target Start/End: Original strand, 7568430 - 7568656
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||| |||| ||| | || |||| | |||||||||||||| |||   ||||| |||||||||| ||||||||       ||||||    
T  7568430 aaaagttattttgtttagtcaatagtataactgtcgattttatgtcagctagtgttctgctggtggaccactctaaaactaaacttt-------tacaaa 7568522  T
Q  321 tcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagt 417  Q
    ||||| |||||||||||||||||| | ||||||||||||| || | |||||||||||||||||||||||| |||||||  |||||||||||| |||||||    
T  7568523 tcagtcctcatacaaaatattaaggggaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaatcagagacacaattgtaataagt 7568622  T
Q  418 aacgatataataacacacattatggacaaatgtg 451  Q
    || |||||||| |||||| |||||  ||||||||    
T  7568623 aaagatataatgacacactttatgtgcaaatgtg 7568656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 197 - 419
Target Start/End: Complemental strand, 26000904 - 26000675
Alignment:
Q  197 gatgcagtcagaaaattgattctttt-taaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgt---actggtggatcact 292  Q
    |||||||||||||| |||| | |||| ||||| |||||||||| | | |||| ||| | || |||| |||||||||||| | |   |||| | || ||||    
T  26000904 gatgcagtcagaaatttgaattttttgtaaaagttattttgttgaatcaatagtataactgtcgatatcatgtcagctactatcctactgatagaccact 26000805  T
Q  293 ctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaattttta 391  Q
    |||||| |||||||||  |||||||||||||||||||||||||||||||||| | ||||||||| ||| || | |||||||||||||||||||||||| |    
T  26000804 ctaaaactaaactttactttattacaaatcagtactcatacaaaatattaagggaaatttcaattttagtgcacaaatgagaatctatgtttaattttga 26000705  T
Q  392 tttaatga--gacacaattgcaataagtaa 419  Q
    |||||| |  ||||||||||||||||||||    
T  26000704 tttaatcaatgacacaattgcaataagtaa 26000675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 451
Target Start/End: Original strand, 38392332 - 38392565
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtggatcac---tctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||  |||||||| | ||| ||| |||| |||||||||||  || |||   ||   ||||||| |||| ||||  ||||||||||    
T  38392332 aaaagttattttgtttagccaataatataactgctgatatcatatcagctagtgtcatgttggtgaaccgttctaaaactaaattttacattattacaaa 38392431  T
Q  321 tcagtactcatacaaaatattaagagaa-tttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaattgcaataagt 417  Q
    |||||  || |||||||||||||| ||| ||||||||||| || |||||||| ||||||||||||||||| ||||||| ||  |||||||||||||||||    
T  38392432 tcagtcatcttacaaaatattaagggaaatttcaatcttagtgcataaatgaaaatctatgtttaattttgatttaatcagggacacaattgcaataagt 38392531  T
Q  418 aacgatataataacacacattatggacaaatgtg 451  Q
    ||  ||||||| ||||||||||||| ||||||||    
T  38392532 aaatatataatgacacacattatgggcaaatgtg 38392565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 451
Target Start/End: Original strand, 49359306 - 49359565
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa--ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtgg---atcactc 293  Q
    |||||| |||||||||| | |||| |||||  |||||||||||||  | || ||| |   |||||||||||||||||||||| || ||||   | || ||    
T  49359306 tgcagttagaaaattgacttttttgaaaaaagttattttgtttagccattagtataacaaccgatgtcatgtcagctagtgtcctagtggtagaccaatc 49359405  T
Q  294 taaaattaaactttatcttattacaaatcagtactcatacaaaatatt-aagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttat 392  Q
    |||| | |||||||| ||||||| |||||||| ||||||||||||||| ||| |||||||||||||| || | ||||   ||||||||||||||||| ||    
T  49359406 taaact-aaactttaccttattataaatcagtcctcatacaaaatattaaagggaatttcaatcttagtgcacaaatagaaatctatgtttaattttgat 49359504  T
Q  393 ttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||  | |||||||||||| ||||||| |||||||| |||||| |||||  ||||||||    
T  49359505 ttaatcagggacacaattgcattaagtaaagatataatgacacaccttatgagcaaatgtg 49359565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 433
Target Start/End: Complemental strand, 44881063 - 44880919
Alignment:
Q  292 tctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaattttt 390  Q
    ||||||| ||||||||| |||||||||||||| | |||||| |||||||||| | ||||||||||| || || | ||||| ||||||||||||||||||     
T  44881063 tctaaaactaaactttaccttattacaaatcaatcctcatataaaatattaaggggaatttcaatcctagtgcacaaatgtgaatctatgtttaattttg 44880964  T
Q  391 atttaat--gagacacaattgcaataagtaacgatataataacac 433  Q
    |||||||  | |||||||||| ||||||||| |||||||| ||||    
T  44880963 atttaatcagggacacaattgtaataagtaaagatataatgacac 44880919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 343
Target Start/End: Complemental strand, 47871365 - 47871210
Alignment:
Q  193 gtgcgatgcagtcagaaaattgattctttttaaaaa--ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtg---ga 287  Q
    |||| ||||||| |||||||||||| |||||| |||  ||||||| |||||  |||||||| | ||  |||||||||||| ||||||| ||| ||   ||    
T  47871365 gtgcaatgcagttagaaaattgattttttttagaaacgttattttatttagccaataatataactgttgatgtcatgtcaactagtgtcctgctgccgga 47871266  T
Q  288 tcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||||||| |||||||||||   | |||||||||||| |||||| ||||||||||    
T  47871265 tcactctaagattaaactttacaatgttacaaatcagtcctcatataaaatattaa 47871210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 4556731 - 4556656
Alignment:
Q  378 atgtttaatttttatttaatgagacac--aattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||||||| ||||||||||| |   ||||| ||||||||| |||||||| ||||||||||||  ||||||||    
T  4556731 atgtttaattttaatttaatgagatatttaattgtaataagtaaagatataatgacacacattatgagcaaatgtg 4556656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 11019759 - 11019700
Alignment:
Q  284 tggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    |||| |||||||| | |||| ||||||||||||||||||||| ||| || ||||||||||    
T  11019759 tggaccactctaagactaaattttatcttattacaaatcagtcctcgtataaaatattaa 11019700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 40744200 - 40744262
Alignment:
Q  278 tactggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatat 340  Q
    ||||||| || |||||||| | ||||| ||| |||||||||||||| | ||||||||||||||    
T  40744200 tactggtagaccactctaagactaaacattaccttattacaaatcaatcctcatacaaaatat 40744262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 36689723 - 36689674
Alignment:
Q  294 taaaattaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||| |||||||||  ||||||||||| ||| |||||||||||||||||    
T  36689723 taaaactaaactttactttattacaaataagtcctcatacaaaatattaa 36689674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 5125478 - 5125442
Alignment:
Q  307 tatcttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  5125478 tatcttattacaaatcagtcctcttacaaaatattaa 5125442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 224 - 451
Target Start/End: Original strand, 11083862 - 11084091
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtggatcactctaaaattaaactttatcttattacaaatca 323  Q
    |||| ||||||| ||||||||||| ||| |||| | || ||||||||||||||||  || | || |||||||||| ||| ||||||||||||||||||||    
T  11083862 aaaagttattttatttagttaatagtataattgtcaatatcatgtcagctagtgtcgtgatagaccactctaaaactaagctttatcttattacaaatca 11083961  T
Q  324 gtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacg 421  Q
    || || ||||||||||| | | ||||||||||||||||| | |||||||||||||||||||||||| |||||||  |||||||||||||||||||||| |    
T  11083962 gtccttatacaaaatataaggggaatttcaatcttaatgaacaaatgagaatctatgtttaattttgatttaatcagagacacaattgcaataagtaaag 11084061  T
Q  422 atataataacacacattatggacaaatgtg 451  Q
    ||||||| |||||| |||||| ||||||||    
T  11084062 atataatgacacaccttatgggcaaatgtg 11084091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 199 - 451
Target Start/End: Complemental strand, 34994202 - 34993942
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa--ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta---ctggtggatcactc 293  Q
    |||||| |||||||||||| |||| |||||  |||||||||||||  ||||  || | ||  ||||||||||| ||||||||    ||||||||  | ||    
T  34994202 tgcagttagaaaattgatttttttaaaaaaaattattttgtttagccaatataataagtgttgatgtcatgtcggctagtgtcatgctggtggactattc 34994103  T
Q  294 taaaattaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttat 392  Q
    ||||| |||| | ||||||||||||||||||| || ||| ||||||||||| | ||||||||||||| || |||||||||||||||||||||||||| ||    
T  34994102 taaaactaaattgtatcttattacaaatcagttcttatataaaatattaaggggaatttcaatcttagtgcataaatgagaatctatgtttaattttgat 34994003  T
Q  393 ttaatga--gacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||||| |  |||||||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  34994002 ttaatcaaggacacaattgtaataagtaaagatataataacatacattatggacaaatgtg 34993942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 199 - 397
Target Start/End: Complemental strand, 4104386 - 4104183
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta---ctggtggatcactct 294  Q
    ||||||||||||| ||| | |||| ||||| ||||||||| | || |||| ||| |||| |||||||||||||| ||||||    |||||||| ||||||    
T  4104386 tgcagtcagaaaactgacttttttgaaaaagttattttgtcttgtcaatagtataattgtcgatgtcatgtcagttagtgtcgtgctggtggaccactct 4104287  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatt 393  Q
    |||| ||||||||  |||||||||||||| |  |||||||||||||||| |||||||||||||||| || | ||||| |||| ||||||||||||| |||    
T  4104286 aaaactaaactttgccttattacaaatcaatcttcatacaaaatattaaggagaatttcaatcttagtgcacaaatgggaatttatgtttaattttgatt 4104187  T
Q  394 taat 397  Q
    ||||    
T  4104186 taat 4104183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 224 - 448
Target Start/End: Original strand, 26301626 - 26301859
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttatt-acaa 319  Q
    |||||||||||| |||||| |||  ||| ||||||||| ||||||| ||||||||  ||   ||||  ||||||||||||||  ||||||||||| ||||    
T  26301626 aaaaattattttatttagtcaatg-tataattgccgatatcatgtcggctagtgtcatgttggtgggccactctaaaattaagttttatcttatttacaa 26301724  T
Q  320 atcagtactcatacaaaatatt----aagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaat 413  Q
    |||||| ||||||||||||||     ||| |||||||||||||| |  | |||||||||||||||||||||||| |||||||  | ||||||||||||||    
T  26301725 atcagttctcatacaaaatatatataaagggaatttcaatcttagtacacaaatgagaatctatgtttaattttgatttaatcagggacacaattgcaat 26301824  T
Q  414 aagtaacgatataataacacacattatggacaaat 448  Q
    |||||| |||||||| |||||  ||||||| ||||    
T  26301825 aagtaaagatataatgacacatcttatggataaat 26301859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 450
Target Start/End: Complemental strand, 30341277 - 30341136
Alignment:
Q  312 tattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaatt 408  Q
    |||||||||| ||| |||||||||||||||||| | ||||||||||||| || |  |||| |||||||| ||||||||| ||||||| |   ||||||||    
T  30341277 tattacaaattagtcctcatacaaaatattaaggggaatttcaatcttagtgcactaatgggaatctatatttaattttgatttaatcatgaacacaatt 30341178  T
Q  409 gcaataagtaacgatataataacacacattatggacaaatgt 450  Q
    ||||||||| | |||||||| |||||  |||||| |||||||    
T  30341177 gcaataagtgaagatataatgacacaacttatgggcaaatgt 30341136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 280 - 383
Target Start/End: Original strand, 6613756 - 6613860
Alignment:
Q  280 ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatcta 378  Q
    |||||||| |||||||| | ||||||| | |||||||||||| | | ||||||||||||||||| |||||||||||||||| || | |||| ||||||||    
T  6613756 ctggtggaccactctaagactaaacttcaccttattacaaatgaatcctcatacaaaatattaaggagaatttcaatcttagtgcacaaataagaatcta 6613855  T
Q  379 tgttt 383  Q
    |||||    
T  6613856 tgttt 6613860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 451
Target Start/End: Complemental strand, 19631967 - 19631860
Alignment:
Q  346 gaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatgga 443  Q
    |||||||||||||| || | |||||||||| ||| ||||||||| |||||||  ||||||| |||||||||||||| |||||||| | |||| |||| |     
T  19631967 gaatttcaatcttagtgcacaaatgagaatttatttttaattttgatttaatcagagacacgattgcaataagtaaagatataatgaaacaccttatagg 19631868  T
Q  444 caaatgtg 451  Q
    ||||||||    
T  19631867 caaatgtg 19631860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 30341555 - 30341461
Alignment:
Q  229 ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtgg---atcactctaaaattaaactttatcttattacaaa 320  Q
    |||||||||||||  | || ||| ||||| |||||||||| ||||||||| ||| |||   |||||||||||| | ||||||| |||||||||||    
T  30341555 ttattttgtttagccagtagtataattgctgatgtcatgttagctagtgtcctgatggtgaatcactctaaaactgaactttaccttattacaaa 30341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 3148918 - 3148971
Alignment:
Q  284 tggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaa 337  Q
    |||| ||||||||| |||||||||  |||||||||||||||| |||||| ||||    
T  3148918 tggaccactctaaatttaaacttttccttattacaaatcagttctcatagaaaa 3148971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 199 - 451
Target Start/End: Complemental strand, 3038775 - 3038517
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta---ctggtggatcactct 294  Q
    ||||||||||||||||| | |||| ||||| |||||||||||||  |||| ||  ||||| |||||||||||| | |||||    |||||||| ||||||    
T  3038775 tgcagtcagaaaattgacttttttaaaaaaattattttgtttagccaatagtagaattgctgatgtcatgtcaacaagtgtcttgctggtggaccactct 3038676  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttattt 394  Q
    |||| ||||||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||| || ||||||| ||||||| |||||||||| ||||    
T  3038675 aaaactaaactttaccttattacaaatcaatcatcatacaaaatattaagggaatttcaatcttagtgcataaatgggaatctaagtttaattttgattt 3038576  T
Q  395 aat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||  | |||||||||||||||||||| |||||||| |||||| ||||||||| |||||    
T  3038575 aatcagggacacaattgcaataagtaaagatataatgacacaccttatggacagatgtg 3038517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 202 - 451
Target Start/End: Original strand, 4108596 - 4108851
Alignment:
Q  202 agtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactctaaa 297  Q
    ||||| |||||||| | |||| ||||| |||||||||||||| |||||||| ||||||| | |||||||||||||||   |  ||||||| |||| ||||    
T  4108596 agtcaaaaaattgacttttttgaaaaagttattttgtttagtcaataatataattgccgttatcatgtcagctagtgtcatgttggtggaccactttaaa 4108695  T
Q  298 attaaactttatcttattacaaatcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat 397  Q
    | ||| ||||||||||||||||| ||||  ||||||||||||| | | |||||||||| ||| || | |||||||||||||||||||||||| |||||||    
T  4108696 actaagctttatcttattacaaaacagtcttcatacaaaatataaggggaatttcaattttagtgcacaaatgagaatctatgtttaattttgatttaat 4108795  T
Q  398 --gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
      | |||||||||||||||||||| |||||||  |||||| |||||| ||||||||    
T  4108796 cagggacacaattgcaataagtaaagatataacgacacaccttatgggcaaatgtg 4108851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 224 - 430
Target Start/End: Complemental strand, 7291063 - 7290851
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaa 320  Q
    ||||||||||||||||||  |||| ||| | || ||||||||| ||| ||||||| |||   ||| | |||||||||| |||||||||||||||||||||    
T  7291063 aaaaattattttgtttaggcaatagtataactgtcgatgtcatatcaactagtgtcctgtttgtgaaccactctaaaactaaactttatcttattacaaa 7290964  T
Q  321 tcagtactcatacaaaatattaaga-gaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaattgcaataagt 417  Q
    ||| | ||||||||||||||||||| |||||||||||||| || | |||||| ||||||||| ||||||| ||||||| ||  | |||||||||||||||    
T  7290963 tcaatcctcatacaaaatattaagaggaatttcaatcttagtgcacaaatgaaaatctatgtctaattttgatttaatcaggaatacaattgcaataagt 7290864  T
Q  418 aacgatataataa 430  Q
    || ||||||||||    
T  7290863 aaagatataataa 7290851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 206 - 418
Target Start/End: Original strand, 23176472 - 23176690
Alignment:
Q  206 agaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtg---gatcactctaaaatta 301  Q
    |||||||||| | |||| ||||| |||||||||||| | |||| ||| ||| ||||| ||||||||||||||||  || ||   || |||||||||| ||    
T  23176472 agaaaattgacttttttgaaaaagttattttgtttattcaatagtataatttccgatatcatgtcagctagtgtcatgttgatggaccactctaaaacta 23176571  T
Q  302 aactttatcttattacaaatcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--ga 399  Q
    | |||||||||||||||||| ||| |||||||||||||| | | |||||||||||||| || | |||||||||||||||||||||||| |||||||  |     
T  23176572 agctttatcttattacaaattagtcctcatacaaaatataaggggaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaatcagg 23176671  T
Q  400 gacacaattgcaataagta 418  Q
    |||||||||||||||||||    
T  23176672 gacacaattgcaataagta 23176690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 199 - 451
Target Start/End: Original strand, 18756345 - 18756604
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgt---actggtggatcactct 294  Q
    ||||||||||||||||||| |||  ||||| |||||||||||||  |||||||| ||||||||||| |||| ||||| |||   ||||||||| ||||||    
T  18756345 tgcagtcagaaaattgattttttggaaaaagttattttgtttagccaataatataattgccgatgttatgttagctaatgtcctactggtggaccactct 18756444  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatt 393  Q
    |||| ||| ||||| ||||||||||||| || ||||||||||||||||| | |||||  ||||||| || | ||| | |||| |||| ||| |||| |||    
T  18756445 aaaactaatctttaccttattacaaatctgtcctcatacaaaatattaaggggaattaaaatcttagtgcacaaaggggaatatatgcttacttttaatt 18756544  T
Q  394 taatga--gacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
     ||| |  |||||||||||||||||||| |||||||| |||||  |||| ||||||||||    
T  18756545 gaatcatggacacaattgcaataagtaaagatataatgacacatcttatagacaaatgtg 18756604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 294 - 450
Target Start/End: Original strand, 6267282 - 6267441
Alignment:
Q  294 taaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttat 392  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||| || | |||||  ||||||||||||||||| ||    
T  6267282 taaaactaaactttatcttattacaaatcagtcatcatacaaaatattaaggggaatttcaatcttagtgcacaaatgcaaatctatgtttaattttgat 6267381  T
Q  393 ttaatga--gacacaattgcaataagtaacgatataataacacacattatggacaaatgt 450  Q
    ||||| |  |||| ||||||||||||||| ||||||||||||||| |||| || ||||||    
T  6267382 ttaatcaaggacataattgcaataagtaaagatataataacacaccttatagataaatgt 6267441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 224 - 382
Target Start/End: Original strand, 28220737 - 28220898
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||| |||| ||| |||| |||| ||||||  |||| |||  ||   ||||| |||||||||| ||| |||||||||||||||||    
T  28220737 aaaagttattttgtttagtcaatagtataattgtcgatatcatgtttgctaatgtcatgttggtggaccactctaaaactaagctttatcttattacaaa 28220836  T
Q  321 tcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtt 382  Q
    ||||| |||||||||||||| | | |||||||||||||| |||| ||| |||||||||||||    
T  28220837 tcagtcctcatacaaaatataaggggaatttcaatcttagtgtacaaaagagaatctatgtt 28220898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 30651006 - 30651108
Alignment:
Q  280 ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaaga-gaatttcaatcttaatgtataaatgagaatcta 378  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||  |||||| ||||||||||| |||||| ||||||| || | |||||| ||||||    
T  30651006 ctggtggaccactctaagattaaactttaccttattacaaatcagtcatcatactaaatattaagaggaattttaatcttagtgcacaaatgaaaatcta 30651105  T
Q  379 tgt 381  Q
    |||    
T  30651106 tgt 30651108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 34686051 - 34685958
Alignment:
Q  289 cactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgt 381  Q
    |||||||| | |||||||||  ||||||||||||||| |||||||||||||||||| | ||||||| ||||| || | |||||||||| |||||    
T  34686051 cactctaagactaaactttactttattacaaatcagtcctcatacaaaatattaagggaaatttcagtcttagtgcacaaatgagaatatatgt 34685958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 199 - 450
Target Start/End: Complemental strand, 22616860 - 22616605
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactct 294  Q
    ||||||||||||| ||||| ||||  |||| |||||||||||||  |||| ||| | ||| |   |||||||||||||||| |||   ||||| ||||||    
T  22616860 tgcagtcagaaaactgatttttttggaaaagttattttgtttagccaatagtataactgcag---tcatgtcagctagtgtcctgctggtggaccactct 22616764  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatt 393  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||||| | |||||||||| ||| || | |||||||||||||||||||||||| |||    
T  22616763 aaaactaaactttaccttattacaaatcagtcctcatacaaaatattaaggggaatttcaattttagtgcacaaatgagaatctatgtttaattttgatt 22616664  T
Q  394 taat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgt 450  Q
    ||||  | |||||||||||||||||||| |||||||| |||||| |||||| |||||||    
T  22616663 taatcagggacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgt 22616605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 224 - 451
Target Start/End: Complemental strand, 33163857 - 33163626
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg--gtggatcactctaaaattaaactttatcttattacaaat 321  Q
    ||||||||||| ||||||| |||| ||| | ||||||||||||||||||||||||  ||  ||||| |||| ||||| ||||||||| ||||||||||||    
T  33163857 aaaaattattt-gtttagtcaatagtataactgccgatgtcatgtcagctagtgtcatgctgtggaccactttaaaactaaactttaccttattacaaat 33163759  T
Q  322 cagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagta 418  Q
    ||||  |||||||||||||||| || |||||||||||||||| | | |||||||| ||||||||||||| |||||||  | |||||||||||||||||||    
T  33163758 cagtcttcatacaaaatattaaggaaaatttcaatcttaatgcacacatgagaatttatgtttaattttgatttaatcagggacacaattgcaataagta 33163659  T
Q  419 acgatataataacacacattatggacaaatgtg 451  Q
    | ||||||||  ||||| ||||||| |||||||    
T  33163658 aagatataatggcacaccttatggataaatgtg 33163626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 224 - 451
Target Start/End: Original strand, 36055579 - 36055811
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta---ctggtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| ||||||||||||| ||||| ||| | || |||||||| |||| |||||||    |||||||  |||||||||| ||||||||| |||||||||||    
T  36055579 aaaagttattttgtttagctaatagtataactggcgatgtcaagtcaactagtgtcgtgctggtggcccactctaaaactaaactttaccttattacaaa 36055678  T
Q  321 tcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagta 418  Q
    ||| | ||||||||| |||||||| |||||||||||||| || | |||||||||||||||||||||||| |||||||  | |||||||||| ||||||||    
T  36055679 tcaattctcatacaagatattaagggaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaatcggggacacaattgtaataagta 36055778  T
Q  419 acgatataataacacacattatggacaaatgtg 451  Q
    | |||||||| |||||| |||||  ||||||||    
T  36055779 aagatataatgacacaccttatgagcaaatgtg 36055811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 230 - 441
Target Start/End: Original strand, 41417289 - 41417506
Alignment:
Q  230 tattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta---ctggtggatcactctaaaattaaactttatcttattacaaatcagta 326  Q
    |||||||||||  ||||| ||| | || |||||||||||||||| ||||    ||||||||||| | ||||| |||| |||| ||||||||||||||||     
T  41417289 tattttgtttaactaatagtataactgtcgatgtcatgtcagctggtgtcatgctggtggatcattttaaaactaaattttaccttattacaaatcagtc 41417388  T
Q  327 ctcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaa--tgagacacaattgcaataagtaacgat 423  Q
     |||||||||||| |||| | ||||||||||||| || | |||||||||||||||||||||||| ||||||  || |||||||||||||||||||| |||    
T  41417389 atcatacaaaataataaggggaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaatctgggacacaattgcaataagtaaagat 41417488  T
Q  424 ataataacacacattatg 441  Q
    | ||| |||||| |||||    
T  41417489 aaaatgacacaccttatg 41417506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 281 - 451
Target Start/End: Complemental strand, 31878668 - 31878494
Alignment:
Q  281 tggtggatcactctaaaattaaactttatcttattacaaatcagtactcatac-aaaatattaag-agaatttcaatcttaatgtataaatgagaatcta 378  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||| | ||||| ||||||||||| ||||||||||||||| || | ||||  |||||||    
T  31878668 tggtggaccactctaaaattaaactttaccttattacagatcagttcccatacaaaaatattaagaagaatttcaatcttagtgcacaaataggaatcta 31878569  T
Q  379 tgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||||||||||| |||||||  | ||||||||||  |||||||| |||||||| |||||| |||| ||||||||||    
T  31878568 tgtttaattttgatttaatcagggacacaattgtcataagtaaagatataatgacacaccttatagacaaatgtg 31878494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 428
Target Start/End: Complemental strand, 21321120 - 21320885
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactct 294  Q
    ||||| ||||||| ||| | |||| ||||| |||||||||||||  |||| ||| | || |||| ||||| |||||||||| |||   |||||||| |||    
T  21321120 tgcagccagaaaactgacttttttgaaaaagttattttgtttagccaatagtataactgacgatttcatgccagctagtgttctgctggtggatca-tct 21321022  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatt 393  Q
    |||| ||||||||| |||  ||||||||| | |||||||||||||||||| | ||||||||| ||| ||   |||||||||||||||||||||||| |||    
T  21321021 aaaactaaactttaccttcctacaaatcaatcctcatacaaaatattaagcgaaatttcaattttagtgctcaaatgagaatctatgtttaattttgatt 21320922  T
Q  394 taat--gagacacaattgcaataagtaacgatataat 428  Q
    ||||  |||||||||||| ||||||||| ||||||||    
T  21320921 taatcagagacacaattgtaataagtaaagatataat 21320885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 428
Target Start/End: Complemental strand, 27579350 - 27579162
Alignment:
Q  244 aataatatgattgccgatgtcatgtcagctagtgt---actggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatat 340  Q
    |||||||| | || ||||||||||| |||||||||   ||||||||| |||||||||| ||||||||| |||||||||||||| | || | |||||||||    
T  27579350 aataatataactgtcgatgtcatgttagctagtgttctactggtggaccactctaaaactaaactttaccttattacaaatcattccttaaacaaaatat 27579251  T
Q  341 taa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacgatataat 428  Q
    ||| |||||||||||||||| || | |||||  ||  |||||||| |||| |||||||  |||||||||||||||||| ||| ||||||||    
T  27579250 taaggagaatttcaatcttagtgcacaaatggaaa--tatgtttacttttgatttaattagagacacaattgcaataaataaagatataat 27579162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 449
Target Start/End: Complemental strand, 10237689 - 10237527
Alignment:
Q  289 cactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaagagaa-tttcaatcttaatgtataaatgagaatctatgtttaatt 387  Q
    ||||||| || ||||||||| |||||||||||| |||  || |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||| |||    
T  10237689 cactctagaactaaactttaccttattacaaattagtcatcgtacaaaatattaagggaaatttcaatcttagtgtacaaatgagaatctatgttt-att 10237591  T
Q  388 tttatttaa--tgagacacaattgcaataagtaacgatataataacacacattatggacaaatg 449  Q
    || ||||||  || |||||||||| |||||||||  ||||||| | | || |||||||||||||    
T  10237590 ttgatttaatctgggacacaattggaataagtaaatatataatgaaataccttatggacaaatg 10237527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 12080415 - 12080558
Alignment:
Q  202 agtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaa 297  Q
    |||||| ||||||| | |||| ||||| ||||||||||||||  |||| || ||||  |||||||||||||||||||| |||   ||||| |||| |||     
T  12080415 agtcaggaaattgacttttttgaaaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtggaccactttaag 12080514  T
Q  298 attaaactttatcttattacaaatcagtactcatacaaaatatt 341  Q
    | ||||||||| |||||||||||||||| |||||||||||||||    
T  12080515 actaaactttaccttattacaaatcagtcctcatacaaaatatt 12080558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 343
Target Start/End: Complemental strand, 13381245 - 13381123
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactctaaaattaaactttatcttattacaaa 320  Q
    ||||||||||||||||||| |||| ||| | ||  |||||||||||||||||||   | |||||||| | ||||||   ||||||||| ||||||| |||    
T  13381245 aaaaattattttgtttagtcaatagtataactgttgatgtcatgtcagctagtgttctgctggtggacctctctaaggctaaactttaccttattataaa 13381146  T
Q  321 tcagtactcatacaaaatattaa 343  Q
    ||| | |||||||||||||||||    
T  13381145 tcaatcctcatacaaaatattaa 13381123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 381
Target Start/End: Original strand, 29766563 - 29766667
Alignment:
Q  278 tactggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatc 376  Q
    ||||| |||| |||||||| | ||||||||| |||||||||||| ||| ||||||||||||||||| | |||||| |||||||||| | ||||| |||||    
T  29766563 tactgatggaccactctaagactaaactttaccttattacaaattagttctcatacaaaatattaaggggaatttaaatcttaatgcacaaatgggaatc 29766662  T
Q  377 tatgt 381  Q
     ||||    
T  29766663 catgt 29766667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 33752910 - 33752985
Alignment:
Q  378 atgtttaatttttatttaatgag--acacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||| ||||||||||| ||  ||||||| ||||||||||| |||| |||||||||| || ||||||||||||    
T  33752910 atgtttaaattttatttaatcagggacacaatggcaataagtaaagatacaataacacaccttgtggacaaatgtg 33752985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 33848549 - 33848624
Alignment:
Q  378 atgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||||||| |||||||  ||||||||||  |||||| ||| |||| ||||||||||||| ||||||||||||    
T  33848549 atgtttaattttgatttaatcagagacacaatgacaataaataaagatacaataacacacattgtggacaaatgtg 33848624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 33848029 - 33848173
Alignment:
Q  203 gtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtg---gatcactctaaaa 298  Q
    ||||||||||||| | |||| ||||| ||| |||||||| | |||||||| ||||   ||| ||||| |||||||||  || ||   ||  ||||||| |    
T  33848029 gtcagaaaattgactattttgaaaaagttactttgtttaatcaataatataattgttaatgacatgtaagctagtgtcatgctgatagactactctaaga 33848128  T
Q  299 ttaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
     ||||||||| ||||||| |||||| | |||||||||||||||||    
T  33848129 ctaaactttaccttattaaaaatcaatcctcatacaaaatattaa 33848173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 10053406 - 10053334
Alignment:
Q  381 tttaatttttatttaatgag--acacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||||||||| ||||||| ||  || |||||||||||||||| |||||||| |||||| |||||  ||||||||    
T  10053406 tttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacaccttatgagcaaatgtg 10053334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 12164049 - 12164136
Alignment:
Q  259 gatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||||||||||||||||||| ||   ||||| || | ||||  |||||||| | ||||||||||||||| |||||| |||| |||||    
T  12164049 gatgtcatgtcagctagtgtattgttggtggaccattgtaaatctaaacttttttttattacaaatcagtcctcataaaaaacattaa 12164136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 25654630 - 25654589
Alignment:
Q  284 tggatcactctaaaattaaactttatcttattacaaatcagt 325  Q
    |||| |||||||||| ||||||||| ||||||||||||||||    
T  25654630 tggaccactctaaaactaaactttaccttattacaaatcagt 25654589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 33752481 - 33752534
Alignment:
Q  290 actctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||||| | ||||||||| ||||||| |||||| | |||||||||||||||||    
T  33752481 actctaagactaaactttaccttattaaaaatcaatcctcatacaaaatattaa 33752534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 21266205 - 21266130
Alignment:
Q  378 atgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||| ||| |||||||  ||||| |||||||||||||||| |||||||| | |||| |||||  ||||||||    
T  21266205 atgtttaaatttgatttaatcagagactcaattgcaataagtaaagatataatgatacaccttatgagcaaatgtg 21266130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 255 - 452
Target Start/End: Complemental strand, 15651161 - 15650958
Alignment:
Q  255 tgccgatgtcatgtcagctagtgtact---ggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaata-ttaagagaatt 350  Q
    |||||||||||||||| ||| ||| ||   |||||| ||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||| |||||||    
T  15651161 tgccgatgtcatgtcatctaatgtcctaccggtggaccactctaaaattaaactttactttattacaaatcagtcctcatacaaaatatttaggagaatt 15651062  T
Q  351 tcaatcttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaattgcaataagtaacgatataataacacacattatggacaaat 448  Q
    ||||| ||| || | |||||||| ||||||||||||||| ||||||| ||  ||||||||||||||||||| |||||||| |||||| |||||| |||||    
T  15651061 tcaattttagtgcacaaatgagattctatgtttaattttgatttaatcaggaacacaattgcaataagtaaagatataatgacacaccttatgggcaaat 15650962  T
Q  449 gtga 452  Q
    ||||    
T  15650961 gtga 15650958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 224 - 448
Target Start/End: Original strand, 18059066 - 18059296
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtg---gatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||| |||| ||| |||| ||||||||||| ||||||||| ||| |    || |||||||||| ||||||||| ||| |||||||    
T  18059066 aaaagttattttgtttagtcaatagtataattgtcgatgtcatgttagctagtgtgctgctaatagaccactctaaaactaaactttaccttgttacaaa 18059165  T
Q  321 tcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatga--gacacaattgcaataagt 417  Q
    |||||  ||||||||||||||||| | ||||||||||||| || | ||| |||||||||| ||||||||| || |||| |  ||||||||||||||||||    
T  18059166 tcagtcatcatacaaaatattaaggggaatttcaatcttagtgcacaaacgagaatctatatttaattttaatctaatcaaggacacaattgcaataagt 18059265  T
Q  418 aacgatataataacacacattatggacaaat 448  Q
    || ||||||||||||||||||||||| ||||    
T  18059266 aaagatataataacacacattatggataaat 18059296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 230 - 451
Target Start/End: Complemental strand, 41644211 - 41643983
Alignment:
Q  230 tattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta---ctggtggatcactctaaaattaaactttatcttattacaaatcagta 326  Q
    ||||||||||||  |||||||| ||||  ||||||||||||||||||||    |||||||| |||||||||| |||||| || ||||||||||||||||     
T  41644211 tattttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctaccttattacaaatcagtc 41644112  T
Q  327 ctcatac-aaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacga 422  Q
    ||||||| |||||||||| | |||||||||||||| || | ||||||||| |||||||||||||| |||||||  | || ||||||||||||||||| ||    
T  41644111 ctcatacaaaaatattaaggggaatttcaatcttagtgcacaaatgagaaactatgtttaattttgatttaatcagggatacaattgcaataagtaaaga 41644012  T
Q  423 tataataacacacattatggacaaatgtg 451  Q
    |||||| |||||| |||||  ||||||||    
T  41644011 tataatgacacaccttatgatcaaatgtg 41643983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 199 - 445
Target Start/End: Original strand, 39788289 - 39788541
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactcta 295  Q
    ||||||| ||||| ||||| |||| ||||| ||||||||||||| |||| ||| | || |||||||||||||  | |||   | |||||||| |||||||    
T  39788289 tgcagtctgaaaactgatttttttgaaaaagtattttgtttagtcaatagtataactgtcgatgtcatgtcaattggtgtcctgctggtggaccactcta 39788388  T
Q  296 aaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttattt 394  Q
    ||| ||||||||| |||||||||||||||| ||||||| ||||||||| | |||||||||| ||| || | |||| ||||||||||||||||||| ||||    
T  39788389 aaaataaactttaccttattacaaatcagttctcatacgaaatattaaggggaatttcaattttagtgcacaaatcagaatctatgtttaattttgattt 39788488  T
Q  395 aa--tgagacacaattgcaataagtaacgatataataacacacattatggaca 445  Q
    ||   |||||| ||||||| |||||||| ||||||| |||||  |||||||||    
T  39788489 aaccagagacataattgcagtaagtaacaatataatgacacattttatggaca 39788541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 224 - 449
Target Start/End: Complemental strand, 6178118 - 6177888
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||  |||| ||| | |||||||||||||||||||||||   |  ||||||| ||||||| || ||||||||| |||||||||||    
T  6178118 aaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggaccactctagaactaaactttaccttattacaaa 6178019  T
Q  321 tcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagt 417  Q
    |||||  || |||||||||||||| | ||||||||||||| || | |||||||||||||||||| ||||| |||||||  | |||||||||| |||||||    
T  6178018 tcagtcatcgtacaaaatattaagggaaatttcaatcttagtgcacaaatgagaatctatgttt-attttgatttaatcagggacacaattggaataagt 6177920  T
Q  418 aacgatataataacacacattatggacaaatg 449  Q
    ||  ||||||| ||| || |||||| ||||||    
T  6177919 aaatatataatgacataccttatgggcaaatg 6177888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 197 - 415
Target Start/End: Original strand, 18947286 - 18947511
Alignment:
Q  197 gatgcagtcagaaaattgattcttttt---aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtgg---atca 290  Q
    ||||||||||||||| |||  ||||||   |||||||||||||||||||  ||| ||| |  ||| || |||||  ||||||||| ||| |||   | ||    
T  18947286 gatgcagtcagaaaactga--ctttttcagaaaaattattttgtttagtcgatagtataacggccaatatcatgctagctagtgtcctgctggtgtacca 18947383  T
Q  291 ctctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttt 389  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||| ||||    
T  18947384 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaaggggaatttcaatcttaatgcacaaatgagaatctatgtttactttt 18947483  T
Q  390 tatttaat--gagacacaattgcaataa 415  Q
     |||||||  | ||||||||||| ||||    
T  18947484 gatttaatcagggacacaattgctataa 18947511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 224 - 440
Target Start/End: Original strand, 18779111 - 18779325
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgt---actggtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||| |||| ||| | | |||||||||||| |||||||||   |||||  ||||||||||||| ||||||||| |||||||||||    
T  18779111 aaaagttattttgtttagtcaatagtataactaccgatgtcatgtaagctagtgtcctactggatgatcactctaaaactaaactttaccttattacaaa 18779210  T
Q  321 tcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaattgcaataagta 418  Q
    |||||  ||||| |||  |       ||||||||||||| || | |||||||||||||||||||| ||| ||||||| ||  ||||||||||||||||||    
T  18779211 tcagtcgtcatataaagga-------aatttcaatcttagtgcacaaatgagaatctatgtttaactttgatttaatcaggaacacaattgcaataagta 18779303  T
Q  419 acgatataataacacacattat 440  Q
    | |||| |||||||||| ||||    
T  18779304 aagataaaataacacactttat 18779325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 208 - 442
Target Start/End: Complemental strand, 42005737 - 42005506
Alignment:
Q  208 aaaattgattctttttaaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtg---gatcactctaaaattaaac 304  Q
    |||||||||| |||  |||||||||||||||||||||||| |         ||| ||||||||||||||||  || ||   || |||| |||||||||      
T  42005737 aaaattgattttttaaaaaaattattttgtttagttaatagt---------gatatcatgtcagctagtgtgatgttgatggaccactttaaaattaagt 42005647  T
Q  305 tttatcttattacaaatcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat---gaga 401  Q
    ||||| ||||||||||||||  |||||||||||||| | || ||||||||||||| || | |||||||||||||||||||||||| |||||||   | ||    
T  42005646 tttattttattacaaatcagctctcatacaaaatataaggaaaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaatcagggga 42005547  T
Q  402 cacaattgcaataagtaacgatataataacacacattatgg 442  Q
    ||||||| |||||||||| ||| |||| |||||| ||||||    
T  42005546 cacaattacaataagtaaagatgtaatgacacaccttatgg 42005506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 290 - 448
Target Start/End: Original strand, 27138794 - 27138955
Alignment:
Q  290 actctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaattt 388  Q
    |||||||||||||| |||| |||||||||||| ||| ||||| ||||||||||| | |||||||||||||| || | ||||| |||||||||||||||||    
T  27138794 actctaaaattaaattttaccttattacaaataagtcctcatgcaaaatattaaggtgaatttcaatcttagtgcacaaatgggaatctatgtttaattt 27138893  T
Q  389 ttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaat 448  Q
    | |||||||  | |||||||||||||   |||| |||||||| |||||| |||||| |||||    
T  27138894 tgatttaatcagggacacaattgcaacccgtaaagatataatgacacactttatgggcaaat 27138955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 209 - 451
Target Start/End: Complemental strand, 41713522 - 41713273
Alignment:
Q  209 aaattgattctttttaaaaa--ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactctaaaattaaa 303  Q
    ||||||||| ||||| ||||  |||||||||||||| |||| ||| |||  | || |||||||||||||||   |  ||||||| |||||||||| |||     
T  41713522 aaattgattttttttgaaaaagttattttgtttagtcaatagtataattatcaatatcatgtcagctagtgtcatgttggtggaccactctaaaactaag 41713423  T
Q  304 ctttatcttattacaaatcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gaga 401  Q
     ||||||||||||||||||||| |||| ||||||||| | | |||||||| | ||| || | || ||||||||||||||||||||| |||||||  | ||    
T  41713422 ttttatcttattacaaatcagtcctcacacaaaatataaggggaatttcatttttagtgcacaagtgagaatctatgtttaattttgatttaattaggga 41713323  T
Q  402 cacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
     ||||||| ||||||||   ||||||| |||||  |||||| ||||||||    
T  41713322 aacaattgtaataagtatacatataatgacacatcttatgggcaaatgtg 41713273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 199 - 451
Target Start/End: Complemental strand, 19073722 - 19073469
Alignment:
Q  199 tgcagtcagaaaattgattctttt-taaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtgg---atcactct 294  Q
    |||| |||||||||||| | |||| ||||| ||||||| |||||| |||| ||| ||||  |||||||||||||  ||||| ||| |||   | |||| |    
T  19073722 tgcaatcagaaaattgacttttttgtaaaagttattttatttagtcaatagtataattgttgatgtcatgtcagtcagtgtcctgctggtgaaccacttt 19073623  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttattt 394  Q
    |||| |||| |||| |||||||||||||||| ||| || ||||||||||  |||||||| |   ||     |||||||||||||||||||| ||| ||||    
T  19073622 aaaactaaattttaccttattacaaatcagtcctcgtataaaatattaaaggaatttcagtgcaaa-----aaatgagaatctatgtttaactttgattt 19073528  T
Q  395 aat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||  | ||||||||| ||||||||||  ||||||| |||||| |||| ||||||||||    
T  19073527 aatcagggacacaatttcaataagtaaatatataatgacacaccttatagacaaatgtg 19073469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 322 - 451
Target Start/End: Original strand, 34441729 - 34441860
Alignment:
Q  322 cagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaa 419  Q
    |||| |||||||||||||| | | |||||||||| ||| || | |||||||||||||||||||||||| |||||||  | ||||||||||||||||||||    
T  34441729 cagtcctcatacaaaatataaggggaatttcaattttagtgcacaaatgagaatctatgtttaattttgatttaatcagggacacaattgcaataagtaa 34441828  T
Q  420 cgatataataacacacattatggacaaatgtg 451  Q
     |||||||  |||||  |||||| ||||||||    
T  34441829 agatataacgacacatcttatgggcaaatgtg 34441860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 17244836 - 17244935
Alignment:
Q  283 gtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgt 381  Q
    ||||| |||||||||| ||||||||| |||||||||||||| | ||||||||||||||||| || ||||||||||||| || | ||||||||||||||||    
T  17244836 gtggaccactctaaaactaaactttaccttattacaaatcactcctcatacaaaatattaaggaaaatttcaatcttagtgcacaaatgagaatctatgt 17244935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 34441584 - 34441718
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| ||||||| ||| || |||| ||| ||||||| | |||||||||||||||   |  |||||||||||| ||||| ||| |||||||||||||||||    
T  34441584 aaaagttattttatttggtcaatagtataattgccgttatcatgtcagctagtgtcatgttggtggatcactttaaaactaagctttatcttattacaaa 34441683  T
Q  321 tcagtactcatacaaaatattaagagaatttcaat 355  Q
    ||||| |||||||||||||| | | ||||||||||    
T  34441684 tcagtcctcatacaaaatataaggggaatttcaat 34441718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 378
Target Start/End: Complemental strand, 19093730 - 19093640
Alignment:
Q  289 cactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatcta 378  Q
    |||||||||| ||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||||| || | ||||| |||||||    
T  19093730 cactctaaaactaaactttaccttattacaaatcagtcctcttacaaaatattaaggagaatttcaatcttactgcacaaatgggaatcta 19093640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 428
Target Start/End: Original strand, 38249901 - 38250048
Alignment:
Q  280 ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatcta 378  Q
    |||||||| |||||||||| |||| |||| ||| |||||||||||| |||||||  |||||||| | ||||||||||||||  |   ||||  |||||      
T  38249901 ctggtggaccactctaaaactaaattttaccttgttacaaatcagtcctcatac--aatattaaggggaatttcaatcttagagcgcaaattggaatc-- 38249996  T
Q  379 tgtttaatttttatttaat--gagacacaattgcaataagtaacgatataat 428  Q
    || |||||||| |||||||  | |||||||||||||||||||| ||||||||    
T  38249997 tgattaattttgatttaatcagggacacaattgcaataagtaaagatataat 38250048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 381
Target Start/End: Original strand, 18514436 - 18514597
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta---ctggtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| ||||||||||||| ||||| ||| | ||   ||||||||||| |||||||    |||||||| |||| ||| | | |||||||  |||||| |||    
T  18514436 aaaagttattttgtttagctaatagtataactgttaatgtcatgtcaactagtgtcgtgctggtggaccactataagactgaactttactttattataaa 18514535  T
Q  321 tcagtactcatacaaaatattaagagaa-tttcaatcttaatgtataaatgagaatctatgt 381  Q
    ||| |  ||||||||||||||||  ||| ||||||||||| || | ||||||||||||||||    
T  18514536 tcaatcatcatacaaaatattaatggaaatttcaatcttagtgcacaaatgagaatctatgt 18514597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 30845033 - 30844958
Alignment:
Q  378 atgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||||||| |||||||  ||||| ||| |||||||||||| ||| |||| |||||  |||||||||||||||    
T  30845033 atgtttaattttgatttaattagagactcaaatgcaataagtaaagatttaatgacacatcttatggacaaatgtg 30844958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 32652666 - 32652621
Alignment:
Q  298 attaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    |||||| ||||  ||||||||||||||| |||||||||||||||||    
T  32652666 attaaattttactttattacaaatcagtcctcatacaaaatattaa 32652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 7565543 - 7565511
Alignment:
Q  311 ttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||||||||||||| |||||||||||||||||    
T  7565543 ttattacaaatcagtcctcatacaaaatattaa 7565511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 40912484 - 40912516
Alignment:
Q  311 ttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||||||||||||| |||||||||||||||||    
T  40912484 ttattacaaatcagtcctcatacaaaatattaa 40912516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 280 - 451
Target Start/End: Complemental strand, 27118615 - 27118441
Alignment:
Q  280 ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatcta 378  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||  |||||||||||||||| | |||||||||||||| || |  ||||||||||||    
T  27118615 ctggtggatcactctaaaactatactttaccttattacaaatcagtcatcatacaaaatattaaggggaatttcaatcttagtgcacgaatgagaatcta 27118516  T
Q  379 tgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||||||||||| |||||||  | |||||||||||||||||||| |||||||| |||||| ||||| |||||||||    
T  27118515 tgtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgaacaaatgtg 27118441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 258 - 451
Target Start/End: Original strand, 13876657 - 13876856
Alignment:
Q  258 cgatgtcatgtcagctagtgta---ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttca 353  Q
    |||||||||||||||||||||    |||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||    
T  13876657 cgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactttaccttattacaaatcggtactcatacaaaatattaaggggaatttca 13876756  T
Q  354 atcttaatgtataaatgagaatctatgtttaatttttatttaatga--gacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    || ||| || | ||||| |||||||||||||||||| ||||||| |  || ||||||||||||| |||  ||||||| |||||| |||||| ||||||||    
T  13876757 atattagtgcacaaatgggaatctatgtttaattttgatttaatcaaggatacaattgcaataactaaaaatataatgacacactttatgggcaaatgtg 13876856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 196 - 451
Target Start/End: Complemental strand, 15964472 - 15964211
Alignment:
Q  196 cgatgcagtcagaaaattgattctttttaaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgt---actggtggatcact 292  Q
    ||||||||| ||||||||  || |||  ||||||||||||||||||  |||| ||| | || |||||||||||||||||||||   |||  || | ||||    
T  15964472 cgatgcagttagaaaattatttttttagaaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtgtcctactaatgtaccact 15964373  T
Q  293 ctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaattttta 391  Q
    |||||| |||| |||| |||||||||||||||| |||||| |||||||||| | |||||||||||||| || | ||||| |||||||||||||||||| |    
T  15964372 ctaaaactaaattttaccttattacaaatcagtcctcatataaaatattaaggggaatttcaatcttagtgcacaaatgtgaatctatgtttaattttga 15964273  T
Q  392 tttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||||||  | ||||||||||  || |||||  ||||||| |||||  |||||||||||||||    
T  15964272 tttaatcagggacacaattgatatcagtaagtatataatgacacatcttatggacaaatgtg 15964211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 224 - 450
Target Start/End: Original strand, 10758004 - 10758236
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||||||||||||||||| ||||| ||| | ||||||||| |||| || |||||| |||   |||||||||||||||| |||| |||   ||||||||      
T  10758004 aaaaattattttgtttagctaatagtataactgccgatgttatgtgagttagtgtcctgctggtggatcactctaaaactaaattttgctttattacact 10758103  T
Q  321 tcagtactcatacaaaatattaagagaa-tttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagt 417  Q
    |||||  ||||| ||||||||||||||| ||||||||||| || | |||||||||| ||||||||||||| |||||||  | ||||||||||||||||||    
T  10758104 tcagtcatcatataaaatattaagagaaatttcaatcttagtgcacaaatgagaatatatgtttaattttgatttaattagggacacaattgcaataagt 10758203  T
Q  418 aacgatataataacacacattatggacaaatgt 450  Q
    ||  ||||||| ||||||| ||| | |||||||    
T  10758204 aaaaatataatgacacacactataggcaaatgt 10758236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 199 - 363
Target Start/End: Complemental strand, 16135693 - 16135524
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgt---actggtggatcactct 294  Q
    |||||||||||||||   | |||| ||||| ||||||||||||| ||||| ||| | || ||||||||||||| |||||||   ||||||||| ||||||    
T  16135693 tgcagtcagaaaatttgcttttttgaaaaagttattttgtttagctaatagtataactgtcgatgtcatgtcaactagtgtcatactggtggaccactct 16135594  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgt 363  Q
    |||| ||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  16135593 aaaactaaactttaccctattacaaatcagttctcatacaaaatattaatgagaatttcaatcttaatgt 16135524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 441
Target Start/End: Complemental strand, 16127883 - 16127641
Alignment:
Q  202 agtcagaaaattgattctttttaaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtact---ggtggatcactctaaaa 298  Q
    |||||||||||||| | |||| |||| ||||||| |||||| |||| ||| | || |||||| ||||||| |||||| ||   ||||||  ||| |||||    
T  16127883 agtcagaaaattgacttttttaaaaagttattttatttagtcaatagtattactgtcgatgttatgtcagttagtgtcctgcaggtggactactttaaaa 16127784  T
Q  299 ttaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat 397  Q
     ||||||||| ||||||||||| |||| |||||  |||||||||| | |||| ||||||||| || | |||||||||||||||||||| ||| ||||| |    
T  16127783 ctaaactttaccttattacaaaccagtcctcatttaaaatattaaggggaatctcaatcttagtgcacaaatgagaatctatgtttaa-tttgatttatt 16127685  T
Q  398 gagacacaattgcaataagtaacgatataataacacacattatg 441  Q
     ||  |||||||||||||||||  ||||||| |||||| |||||    
T  16127684 cagggacaattgcaataagtaaacatataatgacacaccttatg 16127641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 428
Target Start/End: Original strand, 31804767 - 31804998
Alignment:
Q  193 gtgcgatgcagtcagaaaattgattcttttta--aaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtggatca 290  Q
    ||||| ||||||||||||||||||| ||||||  ||| ||||||||||||   |||| ||| ||  ||||||| ||||| |||| |||||        ||    
T  31804767 gtgcggtgcagtcagaaaattgatt-tttttagtaaagttattttgtttaaccaatagtataatgaccgatgttatgtcggctaatgtac--------ca 31804857  T
Q  291 ctctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaagagaa-tttcaatcttaatgtataaatgagaatctatgtttaatttt 389  Q
    || ||||||||||||||| ||||||||||| || | |||||| ||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||    
T  31804858 ctataaaattaaactttaccttattacaaaccaattctcatataaaatattaagggaaatttcaatcttagtgcataaatgagaatctatgtttaatttt 31804957  T
Q  390 tatttaat--gagacacaattgcaataagtaacgatataat 428  Q
     |||||||  | ||||||||| ||| |||||| ||||||||    
T  31804958 gatttaatcagtgacacaatttcaagaagtaaagatataat 31804998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 202 - 397
Target Start/End: Complemental strand, 25943563 - 25943365
Alignment:
Q  202 agtcagaaaattgattctttttaaaa-attattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaa 297  Q
    ||||||||||||||  ||||| |||| ||||||||||||||  |||| ||| |||| |||| |||||||| ||||  | |||   ||||| |||||||      
T  25943563 agtcagaaaattga--cttttaaaaacattattttgtttagccaatagtataattgtcgatctcatgtcaactagcattctgttggtggaccactctact 25943466  T
Q  298 attaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaa 396  Q
    | |||| |||||||||||||||||||||  || |||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||| ||||||    
T  25943465 actaaattttatcttattacaaatcagtcatcgtacaaaatattaagagaaatttcaatcttattgcacaaatgagaatctatgtttaattttgatttaa 25943366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 16132681 - 16132586
Alignment:
Q  358 taatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||||||| |||||||||||||||||||||||| |||||||  |||||||||||||||||||||| |||||||| ||||||||||||  ||||||||    
T  16132681 taatgtacaaatgagaatctatgtttaattttgatttaatcagagacacaattgcaataagtaaagatataatgacacacattatgtgcaaatgtg 16132586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 3120626 - 3120727
Alignment:
Q  281 tggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctat 379  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||| | | |||||||| |||||| | ||||| ||||||||    
T  3120626 tggtggaccactctaagattaaactttaccttattacaaatcagtcctcatacaatatattaaggggtatttcaattttaatgcacaaatgtgaatctat 3120725  T
Q  380 gt 381  Q
    ||    
T  3120726 gt 3120727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 47555031 - 47554938
Alignment:
Q  289 cactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaaga-gaatttcaatcttaatgtataaatgagaatctatgt 381  Q
    |||||||| | ||||||||| ||||||||||||||||  |||||||||||||||||| |||||| ||||||| || | ||||||||||||||||    
T  47555031 cactctaagagtaaactttaccttattacaaatcagtcatcatacaaaatattaagaggaatttaaatcttagtgcacaaatgagaatctatgt 47554938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 323
Target Start/End: Complemental strand, 5500697 - 5500596
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg--gtggatcactctaaaattaaactttatcttattacaaat 321  Q
    |||| ||||||||||||| ||||| ||| | |  ||||||||||||||||||||| |||  |||||||||||||||| |||| |||| ||||||| ||||    
T  5500697 aaaagttattttgtttagctaatagtataactatcgatgtcatgtcagctagtgttctgtcgtggatcactctaaaactaaattttaccttattataaat 5500598  T
Q  322 ca 323  Q
    ||    
T  5500597 ca 5500596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 43579515 - 43579462
Alignment:
Q  331 tacaaaatattaag-agaatttcaatcttaatgtataaatgagaatctatgttt 383  Q
    |||||||||||||| ||||||||||||||| || | |||| |||||||||||||    
T  43579515 tacaaaatattaaggagaatttcaatcttagtgcacaaataagaatctatgttt 43579462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 199 - 440
Target Start/End: Complemental strand, 2570848 - 2570600
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactct 294  Q
    ||||||||||||| ||||| ||||  |||| ||||| |||||||  |||||||| |||| ||||||||||| ||||||||| |||   ||||| ||||||    
T  2570848 tgcagtcagaaaactgatttttttagaaaagttattatgtttagacaataatataattgtcgatgtcatgttagctagtgttctgctggtggaccactct 2570749  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatt 393  Q
    |||| ||||||||| |||||||||||||| | |||| |||||||||||| | |||||||||||||| || | |||||  |||||||||||| |||| |||    
T  2570748 aaaactaaactttaccttattacaaatcattcctcaaacaaaatattaaggtgaatttcaatcttagtgcacaaatggaaatctatgtttacttttgatt 2570649  T
Q  394 taat--gagacacaattgcaataagtaacgatataataacacacattat 440  Q
    ||||  | |||||||||||||||| ||| |||||||| |||||| ||||    
T  2570648 taattagggacacaattgcaataaataaagatataatgacacactttat 2570600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 435
Target Start/End: Complemental strand, 2708199 - 2708000
Alignment:
Q  241 gttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaa 337  Q
    ||||||| ||| ||||||||| |||||||||||||||   |  ||||||| |||||||||| ||| |||||||||||||||||||||  |||||||||||    
T  2708199 gttaatagtataattgccgatatcatgtcagctagtgtcatgttggtggaccactctaaaactaagctttatcttattacaaatcagccctcatacaaaa 2708100  T
Q  338 tattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacac 435  Q
    ||  | | |||||||||||||| || | ||||||||||| |||||||||||| |||||||  | ||| |||||||||||||||| |||||||| ||||||    
T  2708099 tagaaggggaatttcaatcttagtgcacaaatgagaatccatgtttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacac 2708000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 224 - 451
Target Start/End: Original strand, 2266561 - 2266793
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||  |||| ||| | || ||||| ||||||||||||||| |||   ||||| | ||||||||| ||||||||  ||||||||||    
T  2266561 aaaagttattttgtttagccaatagtataactgtcgatgccatgtcagctagtgtcctgctggtggacccctctaaaat-aaactttacattattacaaa 2266659  T
Q  321 tcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagt 417  Q
    ||||| |||||||||||||||||| | ||||||||||||| || | ||||| |||||||||||||||||| |||||||   || || | |||||||||||    
T  2266660 tcagtcctcatacaaaatattaagggaaatttcaatcttagtgcacaaatgggaatctatgtttaattttgatttaatcaaagtcatagttgcaataagt 2266759  T
Q  418 aacgatataataacacacattatggacaaatgtg 451  Q
    || |||||||| |||||| |||| ||||||||||    
T  2266760 aaagatataatgacacaccttatagacaaatgtg 2266793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 196 - 452
Target Start/End: Complemental strand, 17612707 - 17612444
Alignment:
Q  196 cgatgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcac 291  Q
    |||||||||||||||||| ||| |||| ||||| ||||||| |||||  |||| ||| | || ||||||||||||||||||||| |||   ||||| |||    
T  17612707 cgatgcagtcagaaaattcatttttttgaaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtgtcctgttggtggaccac 17612608  T
Q  292 tctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaattttt 390  Q
    ||||||| |||| |||| |||||||||||| ||| |||||| ||||||| || | ||||||||||||||    | |||||  |||||||||||||||||     
T  17612607 tctaaaactaaattttaccttattacaaattagtcctcatagaaaatataaaggggaatttcaatcttagcacacaaatggcaatctatgtttaattttg 17612508  T
Q  391 atttaa--tgagacacaattgcaataagtaacgatataataacacacattatggacaaatgtga 452  Q
    ||||||  |  |||| ||||||||||||||| |||  ||| |||||| |||| | |||||||||    
T  17612507 atttaatctaggacataattgcaataagtaaagatgcaatgacacaccttattggcaaatgtga 17612444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 451
Target Start/End: Complemental strand, 9743954 - 9743699
Alignment:
Q  202 agtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtggatcactctaaaatt 300  Q
    ||||| |||||||| | |||| ||||| ||||||||||||   |||||||| |||| | | ||||||| | ||||||| ||||||||||||||||||| |    
T  9743954 agtcaaaaaattgacttttttgaaaaagttattttgtttaaccaataatataattgtcaacgtcatgttaactagtgtcctggtggatcactctaaaact 9743855  T
Q  301 aaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgaga--atctatgtttaatttttatttaat 397  Q
    ||| ||||  |||||||||| |||| ||||||||||||||||| | |||  | ||||||| || | ||||||||  || ||||||||||||| |||||||    
T  9743854 aaattttacattattacaaaccagtcctcatacaaaatattaaggggaacataaatcttagtgcacaaatgagaatatatatgtttaattttgatttaat 9743755  T
Q  398 ga--gacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
     |   ||| ||||||||||||||| ||| |||| | |||| ||||||| |||||||    
T  9743754 caagaacataattgcaataagtaaagatttaatgaaacactttatggaaaaatgtg 9743699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 451
Target Start/End: Original strand, 54995629 - 54995736
Alignment:
Q  346 gaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaattgcaataagtaacgatataataacacacattatgga 443  Q
    |||||||||||||| |  | |||| ||||||||| ||||||||| ||||||| ||  ||||||||||||||||||| |||||||  ||||||||||||||    
T  54995629 gaatttcaatcttagtacacaaataagaatctatatttaattttgatttaatcagggacacaattgcaataagtaaagatataaagacacacattatgga 54995728  T
Q  444 caaatgtg 451  Q
    ||||||||    
T  54995729 caaatgtg 54995736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 381
Target Start/End: Complemental strand, 49879006 - 49878858
Alignment:
Q  236 gtttagttaataatatgattgccgatgtcatgtcagctagtgta--ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatac 333  Q
    ||||||| ||| |||| ||||  |||||||||||| |||||||   |||||||| || ||||| | ||||||||| ||||||| ||||||||  ||||||    
T  49879006 gtttagtcaatgatataattgttgatgtcatgtcaactagtgtctgctggtggaccattctaagactaaactttaccttattataaatcagtcatcatac 49878907  T
Q  334 aaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgt 381  Q
    ||||||||||| | |||||||||||||||| | |||||| ||| |||||    
T  49878906 aaaatattaagggaaatttcaatcttaatgcacaaatgaaaatttatgt 49878858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 451
Target Start/End: Complemental strand, 1012596 - 1012407
Alignment:
Q  259 gatgtcatgtcagctagtgtactg---gtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaagagaatttcaat 355  Q
    ||||||||||||||||||||||||   ||||| || ||||||| |||| |||| |||||||||||||| |  |||||         | | ||||||||||    
T  1012596 gatgtcatgtcagctagtgtactgctagtggaccattctaaaactaaattttaccttattacaaatcaatcttcata---------aggggaatttcaat 1012506  T
Q  356 cttaatgtataaatgagaatctatgtttaatttttatttaatgag--acacaa-ttgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
     ||| || | ||||  |||||||||||||||||| ||||||| ||  |||||| ||||||||||||| |||||||| |||||| |||||| ||||||||    
T  1012505 tttagtgcacaaataggaatctatgtttaattttgatttaatcagggacacaaattgcaataagtaaagatataatgacacaccttatgggcaaatgtg 1012407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 28292432 - 28292486
Alignment:
Q  289 cactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    |||||||| | ||||||||| |||||||||||||| || ||||||||||||||||    
T  28292432 cactctaagactaaactttaccttattacaaatcaataatcatacaaaatattaa 28292486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 33036064 - 33036139
Alignment:
Q  378 atgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||||||| |||||||  ||||| |||||||||||||||| |||||||| ||| || |||| | ||||||||    
T  33036064 atgtttaattttgatttaatcagagactcaattgcaataagtaaagatataatgacaaaccttataggcaaatgtg 33036139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 33255621 - 33255577
Alignment:
Q  381 tttaatttttatttaatgagacacaattgcaataagtaacgatat 425  Q
    ||||| ||| ||||||| ||||||||||||||||||||| |||||    
T  33255621 tttaactttgatttaataagacacaattgcaataagtaaagatat 33255577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 202 - 433
Target Start/End: Complemental strand, 49002591 - 49002353
Alignment:
Q  202 agtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaa 297  Q
    |||||||||| ||||| |||| ||||| ||||||| |||| | |||| ||| |||| |||||||||  |||||| ||| |||   ||||| |||||||||    
T  49002591 agtcagaaaactgatttttttgaaaaagttattttatttaatcaatagtataattgtcgatgtcatagcagctaatgtcctgctggtggaccactctaaa 49002492  T
Q  298 attaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaa 396  Q
    | ||||||||| || ||||||||||||| ||||||||||||||||| | |||||| ||||||| || | ||||| |||||||||||||||||| ||||||    
T  49002491 actaaactttacctcattacaaatcagtcctcatacaaaatattaaggggaattttaatcttagtgcacaaatgggaatctatgtttaattttgatttaa 49002392  T
Q  397 t--gagacacaattgcaataagtaacgatataataacac 433  Q
    |  || ||||||||||||||||||| |||||||| ||||    
T  49002391 tcagacacacaattgcaataagtaaagatataatgacac 49002353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 280 - 451
Target Start/End: Original strand, 22955075 - 22955249
Alignment:
Q  280 ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatcta 378  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||| || | |||||||||||||    
T  22955075 ctggtggaccactctaaaactaaactttaccttattacaaatcagttctcatacaaaatattaagggaaatttcaatcttagtgcacaaatgagaatcta 22955174  T
Q  379 tgtttaatttttatttaat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||| || |||||||  | |||||||||||||||||||| |||| ||| ||| || |||||  ||||||||    
T  22955175 tgtttaatgttgatttaataagggacacaattgcaataagtaaagatacaatgacataccttatgagcaaatgtg 22955249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 280 - 451
Target Start/End: Original strand, 4618518 - 4618692
Alignment:
Q  280 ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatcta 378  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||  |||||||||||||||| | |||||||||||||  || | |||||||||||||    
T  4618518 ctggtggaccactctaaaactaaactttatcttactacaaatcagtcatcatacaaaatattaaggggaatttcaatcttggtgcacaaatgagaatcta 4618617  T
Q  379 tgtttaatttttatttaatgag--acacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    ||||||||||| ||||||||||  | ||||||||||||| |||  ||||||| |||||  ||||| |||||||||    
T  4618618 tgtttaattttgatttaatgaggtatacaattgcaataaataaatatataatgacacattttatgaacaaatgtg 4618692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 239 - 448
Target Start/End: Complemental strand, 5781844 - 5781630
Alignment:
Q  239 tagttaataatatgattgccgatgtcatgtcagctagtgtactggtgg---atcactctaaaattaaactttatcttattacaaatcagtactcatacaa 335  Q
    |||| |||| ||| ||||||||| ||||||||||||||||  || |||   | |||| ||||| |||  ||||  |||||||||||||||  ||||||||    
T  5781844 tagtcaatagtataattgccgatatcatgtcagctagtgtcatgttggtgcaccactttaaaactaagttttactttattacaaatcagtcatcatacaa 5781745  T
Q  336 aatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatga--gacacaattgcaataagtaacgatataataacac 433  Q
    ||||| ||| |||||||||||||| || | |||||||||||||||||||||||| ||||||| |  |||||||||||||||| ||| |||||||| ||||    
T  5781744 aatataaagggaatttcaatcttagtgcacaaatgagaatctatgtttaattttgatttaatcaaggacacaattgcaataaataaagatataatgacac 5781645  T
Q  434 acattatggacaaat 448  Q
    |  |||||| |||||    
T  5781644 attttatggtcaaat 5781630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 427
Target Start/End: Original strand, 37854059 - 37854209
Alignment:
Q  281 tggtggatcactctaaaattaaactttatcttattacaaat-cagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatcta 378  Q
    ||||||| ||||||||||||||||||||  ||||| ||||| |||| |||||||||||||||||| | ||||||||||||| |||| |||||| ||||||    
T  37854059 tggtggaccactctaaaattaaactttactttattccaaattcagtcctcatacaaaatattaaggggaatttcaatcttagtgtacaaatgaaaatcta 37854158  T
Q  379 tgtttaatttttatttaat--gagacacaattgcaataagtaacgatataa 427  Q
    ||||||||||| |||||||  | |||||||||||||| ||||| |||||||    
T  37854159 tgtttaattttgatttaatcagggacacaattgcaatcagtaaagatataa 37854209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 289 - 434
Target Start/End: Complemental strand, 40382165 - 40382016
Alignment:
Q  289 cactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatt 387  Q
    |||||||||| ||||||||| |||||||||||||||| | |||||||||||||||| | ||||||||||||| || | |||||| |||||||||||||||    
T  40382165 cactctaaaactaaactttaccttattacaaatcagtccgcatacaaaatattaagggaaatttcaatcttagtgcacaaatgataatctatgtttaatt 40382066  T
Q  388 tttatttaat--gagacac-aattgcaataagtaacgatataataacaca 434  Q
    ||||||||||  | ||||| ||||| ||||||||| |||||||| |||||    
T  40382065 tttatttaattagggacacaaattgtaataagtaaagatataatgacaca 40382016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 417
Target Start/End: Complemental strand, 4902687 - 4902465
Alignment:
Q  202 agtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactg---gtggatcactctaaa 297  Q
    |||||||||||||| | |||| ||||| |||||||||||||| |||| ||| | ||||||| |||||| || || ||| |||   ||  | |||||||||    
T  4902687 agtcagaaaattgacttttttgaaaaagttattttgtttagtcaatagtataactgccgatatcatgttagttattgtcctgccagtaaaccactctaaa 4902588  T
Q  298 attaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaa 396  Q
    | ||||||||| |||||||||||| ||||||||||||||||||||| | ||||||| |||||| || |||| |  |||||||||||||||||| ||||||    
T  4902587 actaaactttaccttattacaaattagtactcatacaaaatattaaggggaatttctatcttagtgcataatttggaatctatgtttaattttgatttaa 4902488  T
Q  397 t--gagacacaattgcaataagt 417  Q
    |  | ||||| ||||||||||||    
T  4902487 tcagggacactattgcaataagt 4902465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 224 - 450
Target Start/End: Complemental strand, 7743274 - 7743031
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtg---gatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||||||| |||| ||| | || |||||||||||| |||| |||| || ||   || |||||||||| ||||||||| |||||||||||    
T  7743274 aaaagttattttgtttagtcaatagtataactgtcgatgtcatgtcggctaatgtaatgttgatggaccactctaaaactaaactttaccttattacaaa 7743175  T
Q  321 tcagtactcatacaaaatatt-aagagaatttcaatcttaatgtat-----------aaatgagaatctatgtttaatttttatttaat--gagacacaa 406  Q
     |||  |||||| |||||||| ||||| |||||||||||| |||||           |||||||||||||||||||||||| |||||||  | | |||||    
T  7743174 gcagccctcatataaaatattaaagagcatttcaatcttagtgtataaatggaaaacaaatgagaatctatgtttaattttaatttaatcaggggcacaa 7743075  T
Q  407 ttgcaataagtaacgatataataacacacattatggacaaatgt 450  Q
    ||||||||||||| |||||||| |||| | ||||||||||||||    
T  7743074 ttgcaataagtaaagatataatgacacgccttatggacaaatgt 7743031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 449
Target Start/End: Original strand, 23402050 - 23402306
Alignment:
Q  199 tgcagtcagaaaattgattctttttaaaaa-ttattttgtttagttaataatatgattgccgatgtcatgtcagctagtgtactggtgg---atcactct 294  Q
    |||||||| |||| ||| | |||| ||||| |||||||||||||  |||| ||| | ||||||||| ||||||||||||||  || |||   | ||||||    
T  23402050 tgcagtcaaaaaactgacttttttaaaaaagttattttgtttagccaatagtataactgccgatgttatgtcagctagtgtcatgttgggggaccactct 23402149  T
Q  295 aaaattaaactttatcttattacaaatcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatt 393  Q
    |||| ||||||||||| ||||||||||||||  || |||||||||||||| | ||||||| ||||| || | ||||||||||| |||||| ||||| |||    
T  23402150 aaaactaaactttatcctattacaaatcagtcatcgtacaaaatattaagggaaatttcagtcttagtgcacaaatgagaatcaatgttt-attttgatt 23402248  T
Q  394 taat--gagacacaattgcaataagtaacgatataataacacacattatggacaaatg 449  Q
    ||||  | |||||||||| |||||||||  ||||||| ||| |  |||||||||||||    
T  23402249 taatcagggacacaattgaaataagtaaatatataatgacatatcttatggacaaatg 23402306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 260 - 428
Target Start/End: Original strand, 8133299 - 8133473
Alignment:
Q  260 atgtcatgtcagctagtgta---ctggtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaat 355  Q
    |||||||||||||| ||||    |||||| | |||||||||| ||||||||| ||||||||||||||||  ||||  |||||||||| | ||||||||||    
T  8133299 atgtcatgtcagctggtgtcttgctggtgaaccactctaaaactaaactttaccttattacaaatcagtcttcatgtaaaatattaaggggaatttcaat 8133398  T
Q  356 cttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagtaacgatataat 428  Q
    |||| || | |||| |||||||| |||||||||| |||||||  | ||| |||||||||||||||| ||||||||    
T  8133399 cttactgcacaaataagaatctacgtttaattttgatttaattagggacgcaattgcaataagtaatgatataat 8133473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 10675025 - 10675104
Alignment:
Q  283 gtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa-gagaatttcaatcttaat 361  Q
    |||||||||||||| | |||||||||  ||||||||||| ||| ||||||||||||||||| | |||||| |||||||||    
T  10675025 gtggatcactctaagactaaactttactttattacaaattagtcctcatacaaaatattaaggggaatttaaatcttaat 10675104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 19786470 - 19786395
Alignment:
Q  378 atgtttaatttttatttaatga--gacacaattgcaataagtaacgatataataacacacattatggacaaatgtg 451  Q
    |||||||||||| ||||||| |  ||| |||||||||||||||| |||||||| |||||| |||  ||||||||||    
T  19786470 atgtttaattttgatttaatcaaggactcaattgcaataagtaaagatataatgacacaccttacagacaaatgtg 19786395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 449
Target Start/End: Original strand, 24522 - 24752
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtg---tactggtggatcactctaaaattaaactttatcttattacaaa 320  Q
    |||| |||||||||| ||  |||| ||| | |||||||||||||||||||||||   |  ||||||||||||||| || ||||||||| |||||||||||    
T  24522 aaaagttattttgttaagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggatcactctagaactaaactttaccttattacaaa 24621  T
Q  321 tcagtactcatacaaaatattaagag-aatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaat--gagacacaattgcaataagt 417  Q
    |||||  || |||||||||||||| | ||||||||||||| || | |||||||||||||||||| ||||| |||||||  | |||||||||| |||||||    
T  24622 tcagtcatcgtacaaaatattaagggaaatttcaatcttagtgcacaaatgagaatctatgttt-attttgatttaatcagggacacaattggaataagt 24720  T
Q  418 aacgatataataacacacattatggacaaatg 449  Q
    ||  ||||||||||| || |||||| ||||||    
T  24721 aaatatataataacataccttatgggcaaatg 24752  T

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Target: scaffold0050 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 224 - 451
Target Start/End: Complemental strand, 5932 - 5701
Alignment:
Q  224 aaaaattattttgtttagttaataatatgattgccgatgtcatgtcagctagtgta--ctggtggatcactctaaaattaaactttatcttattacaaat 321  Q
    |||||||||||| |||| |||||| ||| | ||  || |||||||||| ||||||   || ||||| |||||||||| ||||||||| ||||||| ||||    
T  5932 aaaaattattttatttaattaatagtataactgtggaagtcatgtcagttagtgtctgctagtggaccactctaaaactaaactttaccttattataaat 5833  T
Q  322 cagtactcatacaaaatattaagagaatttcaatcttaatgtataaatgagaatctatgtttaatttttatttaatga--gacacaattgcaataagtaa 419  Q
    |||| |||||||||||||||||   |||||| ||||||||| | ||||| ||||| |||||||||||| |||||||||  |||| |||||||||||| ||    
T  5832 cagttctcatacaaaatattaaagaaatttcgatcttaatgaacaaatgcgaatccatgtttaattttgatttaatgagggacataattgcaataaggaa 5733  T
Q  420 cgatataataacacacattatggacaaatgtg 451  Q
      ||||||| |||||| |||| | ||||||||    
T  5732 atatataatgacacaccttataggcaaatgtg 5701  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 11445 - 11495
Alignment:
Q  289 cactctaaaattaaactttatcttattacaaatcagtactcatacaaaata 339  Q
    |||||||| | |||| ||||||||||||||||||||| |||||||||||||    
T  11445 cactctaagactaaattttatcttattacaaatcagtcctcatacaaaata 11495  T

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Target: scaffold0262; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 448
Target Start/End: Original strand, 12031 - 12100
Alignment:
Q  381 tttaatttttatttaatgag--acacaattgcaataagtaacgatataataacacacattatggacaaat 448  Q
    ||||||||| ||||||| ||  |||||||||||||||||||  ||||||| |||||  ||||||||||||    
T  12031 tttaattttgatttaatcaggaacacaattgcaataagtaaatatataatgacacatcttatggacaaat 12100  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 66052 - 65992
Alignment:
Q  283 gtggatcactctaaaattaaactttatcttattacaaatcagtactcatacaaaatattaa 343  Q
    ||||| |||| ||| | ||||||||| ||||||| |||| ||| |||||||||||||||||    
T  66052 gtggaccactttaacactaaactttaccttattataaattagtcctcatacaaaatattaa 65992  T

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