View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_35 (Length: 450)
Name: NF17833_high_35
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Complemental strand, 47837861 - 47837439
Alignment:
| Q |
10 |
acatcatcactggtccaacaccaattaaaaataaaaccaaaatcgcacttggcaagtaaccagataccagttgaaccataaatttcctgggnnnnnnnta |
109 |
Q |
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| T |
47837861 |
acatcatcactggtccaacaccaattaaaaataaaaccaaaatcgcacttggcaagtaaccagataccagttgaaccataaatttcctgggaaaaaaata |
47837762 |
T |
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| Q |
110 |
ttgttttaacttttcaatgaatttataacatttaaaaatttcaaactcctatataatattctacataccatggataaatcataatttacaattaatttat |
209 |
Q |
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| T |
47837761 |
ttgttttaacttttcaatgaatttataacatttaaaaatttcaaactcctatataatattctacataccatggataaatcataatttacaattaatttat |
47837662 |
T |
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| Q |
210 |
gttacaatgcatctttttctctcttctcaaaacaggtttactaaaatgaagttccacggtgtatttttcatgcataatgatgacagtcctgacaaaaacc |
309 |
Q |
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| T |
47837661 |
gttacaatgcatctttttctctcttctcaaaacaggtttactaaaatgaagttccacggtgtatttatcatgcataatgatgacagtcctgacaaaaacc |
47837562 |
T |
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| Q |
310 |
aacgttgtgaattctctatatttccaaattctttcttttgataaactgacatgtaaaggcaacacaattatgaaaataattctaactatattgacgtctc |
409 |
Q |
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| T |
47837561 |
aacgttgtaaattctctatatttccaaattctttcttttgataaactgacatgtaaaggcaacacaattatgaaaataattctaactatattgacgtctc |
47837462 |
T |
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| Q |
410 |
aggtaataatcatggttttaaat |
432 |
Q |
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| T |
47837461 |
aggtaataatcatggttttaaat |
47837439 |
T |
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