View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_39 (Length: 431)
Name: NF17833_high_39
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 40 - 423
Target Start/End: Complemental strand, 10495251 - 10494868
Alignment:
| Q |
40 |
gaagttgaaacgcagcagcagcagccatgtctgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttcagaaatgaggatgac |
139 |
Q |
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| T |
10495251 |
gaagttgaaacgcagcagcagcaaccatgtctgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttccgaaatgaggatgac |
10495152 |
T |
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| Q |
140 |
tgagagatactggctatacgccggtgatattcaaaagagcaaggaagctcaaaaagaaacaaagaaaattgacaagttctataagtcttatcataaaaat |
239 |
Q |
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| T |
10495151 |
tgagagatactggctatacgccggtgatattcaaaagagcaaggaagctcaaaaagaaacaaagaaaattgaaaagttctataagtcttatcataaaaat |
10495052 |
T |
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| Q |
240 |
cagtcatggcggaatcttttcaatcagaatcagggaggtcgacgcaatgttcgaatgaactggatgtctaatcccatttcccattctatccctgcagata |
339 |
Q |
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| T |
10495051 |
cagtcatggcggaatcttttcaatcagaatcagggaggtcgacaccatgttcgaatgaactggatgtctaatcccatttcccattctatccctgcagata |
10494952 |
T |
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| Q |
340 |
tcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttcctttcctgcattaattcacattttctctgct |
423 |
Q |
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| T |
10494951 |
tcaccttcttcaacagacaaaactataaggtactaatttaatcatacactttcttttcctgcattagttcacattttctctgct |
10494868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 10509450 - 10509329
Alignment:
| Q |
46 |
gaaacgcagcagcagcagccatgtctgaaccaatggagcagattcgcaacgtctggatatctggtctcttggatccttcagaaatgaggatgactgagag |
145 |
Q |
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| T |
10509450 |
gaaacgcagcagcagcaaccatgtctgagccaatgaagcagattcgaaacatctggatctctggtctccttgatccttccaaggtgaggatgactgagag |
10509351 |
T |
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| Q |
146 |
atactggctatacgccggtgat |
167 |
Q |
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| T |
10509350 |
atactggctctacaccggtgat |
10509329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 7476237 - 7476285
Alignment:
| Q |
370 |
tactaatttaatcatacactttcctttcctgcattaattcacattttct |
418 |
Q |
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||||||||||||| || | |||||||| |||||||| |||||||||||| |
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| T |
7476237 |
tactaatttaatcttagagtttccttttctgcattatttcacattttct |
7476285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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