View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_high_41 (Length: 420)

Name: NF17833_high_41
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_high_41
NF17833_high_41
[»] scaffold0147 (1 HSPs)
scaffold0147 (10-420)||(396-807)
[»] chr4 (23 HSPs)
chr4 (10-420)||(3449615-3450026)
chr4 (64-226)||(4975945-4976107)
chr4 (10-226)||(11494670-11494886)
chr4 (10-226)||(21471030-21471244)
chr4 (67-224)||(44049281-44049437)
chr4 (65-226)||(17139785-17139946)
chr4 (10-219)||(38464507-38464715)
chr4 (10-219)||(4768779-4768986)
chr4 (77-226)||(9890188-9890338)
chr4 (10-128)||(18581161-18581279)
chr4 (64-226)||(51644230-51644392)
chr4 (65-226)||(3403980-3404140)
chr4 (77-232)||(19073380-19073534)
chr4 (64-128)||(30042622-30042686)
chr4 (77-226)||(13173425-13173573)
chr4 (77-226)||(41023578-41023726)
chr4 (65-226)||(49566208-49566368)
chr4 (10-128)||(24417247-24417366)
chr4 (72-206)||(1088023-1088156)
chr4 (95-223)||(4979661-4979785)
chr4 (77-128)||(15999627-15999678)
chr4 (64-123)||(8361860-8361919)
chr4 (301-354)||(955791-955844)
[»] chr2 (31 HSPs)
chr2 (10-226)||(43949976-43950190)
chr2 (10-226)||(19186954-19187170)
chr2 (10-226)||(41008659-41008874)
chr2 (10-225)||(24607311-24607525)
chr2 (64-225)||(9651346-9651509)
chr2 (10-224)||(435469-435681)
chr2 (64-224)||(34921504-34921663)
chr2 (77-226)||(1149654-1149802)
chr2 (65-252)||(12908131-12908321)
chr2 (77-226)||(1100810-1100959)
chr2 (80-252)||(45475609-45475781)
chr2 (77-225)||(3803301-3803448)
chr2 (77-219)||(27276115-27276256)
chr2 (164-225)||(41182952-41183013)
chr2 (64-177)||(41053349-41053461)
chr2 (64-226)||(5335040-5335201)
chr2 (65-226)||(10624198-10624358)
chr2 (77-128)||(24749843-24749894)
chr2 (71-226)||(38945923-38946077)
chr2 (65-226)||(213185-213345)
chr2 (65-128)||(18003102-18003165)
chr2 (65-128)||(41560185-41560248)
chr2 (284-358)||(12905544-12905618)
chr2 (77-226)||(7263211-7263359)
chr2 (77-226)||(39794156-39794304)
chr2 (284-357)||(45479798-45479871)
chr2 (67-128)||(34910117-34910179)
chr2 (177-226)||(24749933-24749982)
chr2 (73-119)||(23001032-23001078)
chr2 (10-40)||(45475566-45475596)
chr2 (284-320)||(39798416-39798453)
[»] chr7 (16 HSPs)
chr7 (10-219)||(47061053-47061261)
chr7 (64-191)||(47741917-47742043)
chr7 (64-128)||(36185974-36186038)
chr7 (65-224)||(18105554-18105712)
chr7 (65-226)||(45763560-45763720)
chr7 (65-128)||(10708110-10708173)
chr7 (65-224)||(30786705-30786863)
chr7 (77-207)||(42499603-42499732)
chr7 (65-206)||(43033154-43033294)
chr7 (65-128)||(618580-618643)
chr7 (77-128)||(29593184-29593235)
chr7 (77-226)||(15059797-15059945)
chr7 (65-126)||(43623978-43624039)
chr7 (305-358)||(30355264-30355317)
chr7 (284-318)||(10705309-10705343)
chr7 (284-320)||(40928930-40928967)
[»] chr6 (14 HSPs)
chr6 (10-226)||(7363048-7363263)
chr6 (64-226)||(2052361-2052522)
chr6 (64-226)||(7361342-7361503)
chr6 (10-226)||(26701944-26702159)
chr6 (65-226)||(31146557-31146716)
chr6 (10-187)||(18606171-18606347)
chr6 (65-225)||(28250064-28250223)
chr6 (65-226)||(18347196-18347356)
chr6 (10-128)||(24218144-24218260)
chr6 (10-206)||(23985756-23985954)
chr6 (10-128)||(2260175-2260293)
chr6 (65-128)||(1612577-1612640)
chr6 (95-226)||(13388449-13388579)
chr6 (163-231)||(1612475-1612543)
[»] scaffold0388 (1 HSPs)
scaffold0388 (10-226)||(11475-11689)
[»] scaffold0360 (1 HSPs)
scaffold0360 (64-226)||(7047-7208)
[»] chr8 (25 HSPs)
chr8 (141-289)||(7168209-7168357)
chr8 (10-226)||(18205912-18206125)
chr8 (64-226)||(2146689-2146850)
chr8 (10-226)||(39752756-39752970)
chr8 (67-226)||(43369963-43370121)
chr8 (77-206)||(35966502-35966630)
chr8 (64-226)||(22577843-22578007)
chr8 (10-128)||(4866560-4866678)
chr8 (65-226)||(8423566-8423726)
chr8 (77-226)||(1114936-1115084)
chr8 (65-226)||(30305302-30305462)
chr8 (65-226)||(32378654-32378814)
chr8 (65-226)||(32432609-32432769)
chr8 (64-128)||(43689830-43689894)
chr8 (77-226)||(20546961-20547110)
chr8 (65-206)||(7340247-7340387)
chr8 (138-226)||(45454653-45454741)
chr8 (77-128)||(31958000-31958051)
chr8 (80-128)||(41744549-41744597)
chr8 (305-358)||(41855363-41855416)
chr8 (306-358)||(42605260-42605312)
chr8 (284-322)||(39514-39553)
chr8 (285-322)||(1116192-1116230)
chr8 (301-358)||(41276881-41276938)
chr8 (64-128)||(22657263-22657327)
[»] chr3 (30 HSPs)
chr3 (10-252)||(29929553-29929795)
chr3 (10-252)||(29978707-29978949)
chr3 (10-225)||(7837722-7837935)
chr3 (64-226)||(6505707-6505869)
chr3 (64-225)||(9582677-9582836)
chr3 (79-226)||(7842746-7842892)
chr3 (65-226)||(13747453-13747613)
chr3 (77-206)||(14398725-14398853)
chr3 (68-207)||(21955955-21956093)
chr3 (64-219)||(46992971-46993124)
chr3 (77-226)||(23442865-23443012)
chr3 (65-226)||(6741043-6741203)
chr3 (65-226)||(9429580-9429740)
chr3 (77-226)||(36817255-36817403)
chr3 (80-225)||(48250602-48250746)
chr3 (77-231)||(50953471-50953624)
chr3 (65-226)||(30947386-30947546)
chr3 (77-128)||(2745059-2745110)
chr3 (65-128)||(8160825-8160888)
chr3 (77-226)||(16444790-16444938)
chr3 (65-119)||(3948909-3948963)
chr3 (284-331)||(66922-66969)
chr3 (305-358)||(45101873-45101926)
chr3 (284-322)||(50957669-50957708)
chr3 (181-226)||(8160728-8160773)
chr3 (305-358)||(46344932-46344985)
chr3 (301-358)||(52570587-52570644)
chr3 (299-356)||(53273223-53273279)
chr3 (301-337)||(9582563-9582599)
chr3 (301-357)||(52567759-52567815)
[»] scaffold0340 (1 HSPs)
scaffold0340 (64-226)||(913-1075)
[»] scaffold0219 (1 HSPs)
scaffold0219 (10-226)||(15804-16017)
[»] chr5 (27 HSPs)
chr5 (10-225)||(4203943-4204157)
chr5 (64-226)||(33993459-33993620)
chr5 (64-226)||(31098666-31098827)
chr5 (77-226)||(28387461-28387609)
chr5 (77-226)||(27867579-27867727)
chr5 (77-226)||(34123653-34123801)
chr5 (64-218)||(18538071-18538227)
chr5 (77-226)||(25896815-25896961)
chr5 (10-206)||(30354149-30354343)
chr5 (64-214)||(7800731-7800880)
chr5 (77-226)||(13567834-13567982)
chr5 (77-226)||(34077959-34078107)
chr5 (65-226)||(37820614-37820774)
chr5 (65-206)||(28886172-28886312)
chr5 (65-225)||(7021618-7021777)
chr5 (67-128)||(34944022-34944083)
chr5 (77-226)||(38859934-38860082)
chr5 (77-128)||(1035376-1035427)
chr5 (65-128)||(21999234-21999297)
chr5 (77-226)||(11033195-11033343)
chr5 (68-128)||(20285193-20285253)
chr5 (65-120)||(14280004-14280059)
chr5 (284-320)||(1039782-1039819)
chr5 (284-320)||(11029067-11029104)
chr5 (305-358)||(17965844-17965897)
chr5 (305-358)||(18538360-18538413)
chr5 (284-320)||(38855774-38855811)
[»] chr1 (36 HSPs)
chr1 (64-252)||(13174017-13174205)
chr1 (10-221)||(22345384-22345595)
chr1 (64-226)||(8459831-8459992)
chr1 (64-219)||(21944116-21944270)
chr1 (10-226)||(19498845-19499059)
chr1 (64-250)||(4516184-4516373)
chr1 (64-226)||(46973382-46973545)
chr1 (10-126)||(1654871-1654987)
chr1 (77-206)||(50117527-50117655)
chr1 (77-219)||(23914022-23914164)
chr1 (65-224)||(36076295-36076453)
chr1 (65-226)||(29356425-29356585)
chr1 (77-226)||(37015085-37015233)
chr1 (77-219)||(5078109-5078250)
chr1 (65-226)||(20349611-20349771)
chr1 (65-206)||(41453991-41454131)
chr1 (65-226)||(3948195-3948355)
chr1 (65-226)||(15047462-15047622)
chr1 (65-226)||(38775859-38776019)
chr1 (72-226)||(22397982-22398135)
chr1 (65-206)||(3983267-3983407)
chr1 (64-252)||(7980846-7981027)
chr1 (65-206)||(31945614-31945754)
chr1 (77-128)||(6561990-6562041)
chr1 (77-226)||(13629586-13629734)
chr1 (77-226)||(44620849-44620996)
chr1 (77-128)||(30905938-30905989)
chr1 (73-128)||(27569095-27569150)
chr1 (77-128)||(44465761-44465812)
chr1 (64-128)||(16247557-16247621)
chr1 (285-322)||(30910007-30910045)
chr1 (284-318)||(36072430-36072464)
chr1 (180-226)||(44465852-44465898)
chr1 (177-226)||(6561910-6561959)
chr1 (284-356)||(29352256-29352329)
chr1 (305-358)||(36908573-36908626)
[»] scaffold0057 (1 HSPs)
scaffold0057 (10-226)||(22976-23190)
[»] scaffold0116 (1 HSPs)
scaffold0116 (77-224)||(11466-11612)
[»] scaffold0361 (1 HSPs)
scaffold0361 (77-226)||(4133-4281)
[»] scaffold0038 (1 HSPs)
scaffold0038 (65-225)||(50226-50385)
[»] scaffold0794 (1 HSPs)
scaffold0794 (164-225)||(5555-5616)
[»] scaffold0494 (2 HSPs)
scaffold0494 (77-226)||(1051-1199)
scaffold0494 (284-320)||(5304-5341)
[»] scaffold0260 (1 HSPs)
scaffold0260 (65-206)||(11934-12074)
[»] scaffold0341 (2 HSPs)
scaffold0341 (77-128)||(17180-17231)
scaffold0341 (177-226)||(17100-17149)
[»] scaffold0744 (1 HSPs)
scaffold0744 (72-226)||(154-307)
[»] scaffold0618 (1 HSPs)
scaffold0618 (305-358)||(3880-3933)


Alignment Details
Target: scaffold0147 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 807 - 396
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||        ||||||||||||||||||||||||| |||||||| |||||||||||    
T  807 catcatcaactttcataccacttccatccaatccccaaatccaatattttttttcatcaaattttgctccaaaatcattcaagcatcaggcataagaggt 708  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    ||||||||| |||||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  707 atcaacacatttttgacgtaaaaaaaacaggtattgaaaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 608  T
Q  210 atcatgggaaacctcggaagtaaggcaccgagaaatacttgtgnnnnnnntttcacaccgaaaaaatgacagctactgtctgcataatcagttttctcgg 309  Q
     ||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  607 gtcatgggaaacctcggaagtaaggcaccgagaaatacttgtgaaaaaattttcacatcgaaaaaatgatagctactgtctgcataatcagttttcttgg 508  T
Q  310 cagttaactgcagtcgattttggaatttttcaacaattaactgccgaggnnnnnnncgtattttatttatgtatctcaac-cgtgtcaacaacaattttc 408  Q
    |||||||||||||||||||||||||||| ||| |  |||||||| ||||       |||||||||||||||||||||| |  |||| |||||||||||||    
T  507 cagttaactgcagtcgattttggaatttctcatcggttaactgcagaggggaaaaacgtattttatttatgtatctcagcatgtgttaacaacaattttc 408  T
Q  409 ataactttctca 420  Q
    ||||||||||||    
T  407 ataactttctca 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 3450026 - 3449615
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||        ||||||||||||||||||||||||| |||||||| |||||||||||    
T  3450026 catcatcaactttcataccacttccatccaatccccaaatccaatattttttttcatcaaattttgctccaaaatcattcaagcatcaggcataagaggt 3449927  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    ||||||||| |||||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3449926 atcaacacatttttgacgtaaaaaaaacaggtattgaaaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 3449827  T
Q  210 atcatgggaaacctcggaagtaaggcaccgagaaatacttgtgnnnnnnntttcacaccgaaaaaatgacagctactgtctgcataatcagttttctcgg 309  Q
     ||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  3449826 gtcatgggaaacctcggaagtaaggcaccgagaaatacttgtgaaaaaattttcacatcgaaaaaatgatagctactgtctgcataatcagttttcttgg 3449727  T
Q  310 cagttaactgcagtcgattttggaatttttcaacaattaactgccgaggnnnnnnncgtattttatttatgtatctcaac-cgtgtcaacaacaattttc 408  Q
    |||||||||||||||||||||||||||| ||| |  |||||||| ||||       |||||||||||||||||||||| |  |||| |||||||||||||    
T  3449726 cagttaactgcagtcgattttggaatttctcatcggttaactgcagaggggaaaaacgtattttatttatgtatctcagcatgtgttaacaacaattttc 3449627  T
Q  409 ataactttctca 420  Q
    ||||||||||||    
T  3449626 ataactttctca 3449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 4975945 - 4976107
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| ||||||||||||  ||||||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||| ||| |    
T  4975945 catcaaatcttgatccaaaatcattccagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaaacaggtattgagcattttaatccgttca 4976044  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  4976045 ttttttggtttcgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 4976107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 11494670 - 11494886
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  11494670 catcatcaacttccataccacttccatccaatccccaaatccaatattttttt-catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 11494768  T
Q  110 atcaacacacttttgacgtnnnnnnnn-caggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactt 208  Q
    ||| |||||||||||||||         ||||||||||  ||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||     
T  11494769 atccacacacttttgacgtaaaaaaaaacaggtattgaacattttaatccgttcattttttggttttgttatgggtatctacgtcaattacatagaactc 11494868  T
Q  209 tatcatgggaaacctcgg 226  Q
    | ||||||||||||||||    
T  11494869 tgtcatgggaaacctcgg 11494886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 21471030 - 21471244
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||| ||||||| |||||||||||||||||||| |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  21471030 catcgtcaacttccataccacttccatccaattcccaaatccaatatttttt--catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 21471127  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta-ttttttggttttgttatgggtatctacgtcagttacgtagaactt 208  Q
    |||||||||||||||||||        ||||||||||| ||||||||| ||| | |||||| |||||||||||||| ||||| ||||||||||||||||     
T  21471128 atcaacacacttttgacgt-aaaaaaacaggtattgagcattttaatccgttcattttttttgttttgttatgggtgtctacatcagttacgtagaactc 21471226  T
Q  209 tatcatgggaaacctcgg 226  Q
    | ||||||||| ||||||    
T  21471227 tgtcatgggaatcctcgg 21471244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 44049281 - 44049437
Alignment:
Q  67 caaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattt 166  Q
    ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||| ||| ||||    
T  44049281 caaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttcattt 44049379  T
Q  167 tttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 224  Q
    |||| |||||||| ||||||||||||||||||||||||||| |  |||||||||||||    
T  44049380 tttgattttgttacgggtatctacgtcagttacgtagaactctgccatgggaaacctc 44049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 17139785 - 17139946
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||        ||||||||||| ||||||||||||| ||    
T  17139785 atcaaatcttgctccaaaatcattgaagcatcaaccataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgagcattttaatcggttcat 17139883  T
Q  165 tttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcgg 226  Q
    |||| | ||||||||||||| | |||||||| |||||||||||| | ||||||||| ||||||    
T  17139884 ttttagcttttgttatgggtttttacgtcagtttacgtagaactctgtcatgggaatcctcgg 17139946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 38464715 - 38464507
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||        |||||||| ||| |||||||||||| ||||||||||||||||||||    
T  38464715 catcatcaacttccataccacttccatccaatccccaaatccaatattttgtt-catcaaatcttgatccaaaatcattcaagcatcaagcataagaggt 38464617  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactt 208  Q
    || | ||||||||||||||        ||||||||||| ||||||||  ||| ||||||||| |||||||||||| | |||||||| || |||||||||     
T  38464616 attagcacacttttgacgt-aaaaaaacaggtattgagcattttaattcgttcattttttggctttgttatgggtttttacgtcagtttgcgtagaactc 38464518  T
Q  209 tatcatgggaa 219  Q
    | |||||||||    
T  38464517 tgtcatgggaa 38464507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 4768779 - 4768986
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||| || |||||||||||||||||||  | |||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  4768779 catcatcaatttccataccacttccatccaatccctaaatccaatattttttt-catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 4768877  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||| ||||||||||        |||||||  || ||||||||  ||| ||||||| |||||||||||| |||||  ||||||||||||||||| |    
T  4768878 atcaacacccttttgacgt-aaaaaaacaggtatatagcattttaattcgttcatttttttgttttgttatggatatctctgtcagttacgtagaactct 4768976  T
Q  210 atcatgggaa 219  Q
     |||||||||    
T  4768977 gtcatgggaa 4768986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 9890188 - 9890338
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtt-tattttttggtttt 175  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||        ||| ||||| | |||||| ||| || ||||||||  || |    
T  9890188 tccaaaatcattcaagcatcaagcataagaggtatcaacacacatttgacgtaaaaaaaacagatattgtgcattttattcgattgtatttttttattat 9890287  T
Q  176 gttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
     |||||||||||||||| |||||||||||||| | ||||||||| ||||||    
T  9890288 tttatgggtatctacgtgagttacgtagaactctgtcatgggaatcctcgg 9890338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 18581279 - 18581161
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| ||||||||||||||||||   |||||| |||||        |||||||| |||||||||||||||| |||||||||||||| |||||    
T  18581279 catcatcaacttccataccacttccatccaaaccccaaatccaatattttttttcatcaaatcttgctccaaaatcattcaagcatcaagcataggaggt 18581180  T
Q  110 atcaacacacttttgacgt 128  Q
    ||||||| |||||||||||    
T  18581179 atcaacagacttttgacgt 18581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 51644392 - 51644230
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| | | ||||  |||||    
T  51644392 catcaaatctggctccaaaatcattcaagcatcaagcatatgaggtatcaacacacttttgacgt-aaaaaaacaggtattgagcactataattcgttta 51644294  T
Q  164 ttttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| |||||||||||| | ||||| || |||| ||||||| | ||||||||| ||||||    
T  51644293 ttttttggctttgttatgggtttttacgttagtttacttagaactctgtcatgggaatcctcgg 51644230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 3403980 - 3404140
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | | || ||    
T  3403980 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgattgat 3404078  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  3404079 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 3404140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 19073534 - 19073380
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  19073534 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 19073436  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagtaa 232  Q
    |||||||||||||| | |||||||||||||  | ||||||||| |||||| |||||    
T  19073435 ttatgggtatctacttgagttacgtagaaccctgtcatgggaatcctcggcagtaa 19073380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 30042622 - 30042686
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  30042622 catcaaatcttgctccaaaatcatttaagcatcaagcataggaggtatcaacacccttttgacgt 30042686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 13173425 - 13173573
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||||| | || ||||||   || |     
T  13173425 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttaattgattgatttttgtattatt 13173523  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  13173524 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 13173573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 41023578 - 41023726
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  41023578 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 41023676  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||  ||||||||||| |||||||||||||  | ||||||||| ||||||    
T  41023677 ttaaaggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 41023726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 49566368 - 49566208
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  49566368 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 49566270  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  49566269 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 49566208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 24417366 - 24417247
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaatttt-gctccaaaatcatttaagcatcaagcataagagg 108  Q
    |||||||||||| ||||||||||||||| |||  |||||| |||||        | |||||| || |||||||||||||| ||||||||| |||| |||     
T  24417366 catcatcaacttccataccacttccatctaatccccaaatccaatattttttaccttcaaatcttagctccaaaatcattgaagcatcaaacataggaga 24417267  T
Q  109 tatcaacacacttttgacgt 128  Q
    ||||||||||||||||||||    
T  24417266 tatcaacacacttttgacgt 24417247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 1088023 - 1088156
Alignment:
Q  72 tttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttgg 171  Q
    |||| |||||||||||| ||||||||||||||  |||||||||||||| ||||||||        ||||||||| | |||||| | |||| ||||| |      
T  1088023 tttgatccaaaatcattcaagcatcaagcatagaaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttattgggttgattttatta 1088121  T
Q  172 ttttgttatgggtatctacgtcagttacgtagaac 206  Q
    || | |||||||||||||||| |||||||||||||    
T  1088122 ttattttatgggtatctacgtgagttacgtagaac 1088156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 4979785 - 4979661
Alignment:
Q  95 tcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtca 194  Q
    ||||||||| |||||||||| |||||||||||||         || ||||||| ||||||||| ||| |||||| ||||||||||||||||||||| |||    
T  4979785 tcaagcataggaggtatcaatacacttttgacgtaaaaaaat-agctattgagcattttaatccgttcattttt-ggttttgttatgggtatctacatca 4979688  T
Q  195 gttacgtagaactttatcatgggaaacct 223  Q
    |||  |||||||| | |||||||||||||    
T  4979687 gtt--gtagaactctgtcatgggaaacct 4979661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 15999678 - 15999627
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  15999678 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 15999627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 8361919 - 8361860
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacactttt 123  Q
    |||||||| ||| |||||||||||| ||| ||||| | || |||||||||||||||||||    
T  8361919 catcaaatcttgatccaaaatcattgaagaatcaatcctaggaggtatcaacacactttt 8361860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 955844 - 955791
Alignment:
Q  301 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgcc 354  Q
    |||||||||||||||||||||| ||||||| |||||  ||| || |||||||||    
T  955844 ttttctcggcagttaactgcagccgatttttgaattcctcagcagttaactgcc 955791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 43950190 - 43949976
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  43950190 catcatcaacttccataccacttccatccaatccccaaattcaatattttttt-catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 43950092  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||        ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |    
T  43950091 atcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttcattttttggttttgttatgggtatctacgttagttacgtagaactct 43949993  T
Q  210 atcatgggaaacctcgg 226  Q
     ||||||||||||||||    
T  43949992 gtcatgggaaacctcgg 43949976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 19187170 - 19186954
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnn-catcaaattttgctccaaaatcatttaagcatcaagcataagagg 108  Q
    |||||||||||| |||||||||||||||||| | | |||| |||||         |||||||| |||||||||||||||| ||| |||||||||| ||||    
T  19187170 catcatcaacttccataccacttccatccaaatcctaaatccaataattttttttcatcaaatcttgctccaaaatcattcaagtatcaagcataggagg 19187071  T
Q  109 tatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactt 208  Q
    ||||||||||| ||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      
T  19187070 tatcaacacacatttgacgtaaaaaaa-caggtattgagcattttaatcggtttattttttggttttgttatgggtttctacgtcagttacgtagaaccc 19186972  T
Q  209 tatcatgggaaacctcgg 226  Q
    ||||||||||| ||||||    
T  19186971 tatcatgggaatcctcgg 19186954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 41008874 - 41008659
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  |||| |||||||||||||  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  41008874 catcatcaacttcaatactacttccatccaatccccaaatccaataatttttttcatcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 41008775  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||        |||||||| || ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |    
T  41008774 atcaacacacttttgacgtaaaaaaa-caggtattaagcattttaatctgttcattttttggttttgttatgggtatctatgtcagttacgtagaactct 41008676  T
Q  210 atcatgggaaacctcgg 226  Q
     ||||||||||||||||    
T  41008675 gtcatgggaaacctcgg 41008659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 24607525 - 24607311
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  ||||||| ||||| ||||  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  24607525 catcatcaacttcaataccacctccattcaatccccaaatccaatattttttttcatcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 24607426  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||        ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  24607425 atcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactct 24607327  T
Q  210 atcatgggaaacctcg 225  Q
     ||||||||| |||||    
T  24607326 gtcatgggaatcctcg 24607311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 9651346 - 9651509
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnn--caggtattgagaattttaatcggtt 161  Q
    |||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||          ||||||| ||| ||||||||| |||    
T  9651346 catcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaaaaacaggtatcgagcattttaatccgtt 9651445  T
Q  162 tattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
     ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  9651446 cattttttggttttgttatgggtaactacgtcagttacgtagaactctgtcatgggaaacctcg 9651509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 435469 - 435681
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  |||| |||||||||||||  |||||| |||||        |||||||| ||| || ||||||||| ||||||||| |||| |||||    
T  435469 catcatcaacttcaatactacttccatccaatccccaaatccaataatttttttcatcaaatcttgatctaaaatcattcaagcatcaaacataggaggt 435568  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||         ||| |||||| ||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||| |    
T  435569 atcaacacacttttgacgtaaaaaaa--agggattgagcattttaatccgttcattttttggttttgttatgggtatttacgtcacttacgtagaactct 435666  T
Q  210 atcatgggaaacctc 224  Q
     ||||||||||||||    
T  435667 gtcatgggaaacctc 435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 34921663 - 34921504
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||||||||| |||||||||||||| |||||||||||| ||||| |||||        ||| ||||||| ||||||||| ||| |    
T  34921663 catcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacaaactttcgacgtaaaaaaa-cagatattgagcattttaatccgttca 34921565  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 224  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||    
T  34921564 ttttttggttttgttatgggtatctacgtcagttacgtaggactctgtcatgggaatcctc 34921504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 1149654 - 1149802
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || ||||||||||| ||    
T  1149654 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaa-caggtattgtgcattttattcgattgattttttggttatg 1149752  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| |||||||||||||||||||||  | ||||||||| ||||||    
T  1149753 ttatgggtttctacgtcagttacgtagaaccctgtcatgggaatcctcgg 1149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 12908321 - 12908131
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataa--gaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttt 162  Q
    ||||||| |||||||||||||||| || |||||||||||   ||||||||||||||||||||||||        ||||||||||  ||||||||| |||     
T  12908321 atcaaatcttgctccaaaatcattcaaacatcaagcatataggaggtatcaacacacttttgacgtaaaaaaaacaggtattgaacattttaatccgttc 12908222  T
Q  163 attttttggttttgttatgggtatctacgtcagtt-acgtagaactttatcatgggaaacctcggaagtaaggcaccgagaaatacttgtg 252  Q
    ||||||||  |||||||||||| | ||||| |||| |||||||||| | ||||||||| |||||| ||||||| | ||||||||| |||||    
T  12908221 attttttgactttgttatgggtttttacgttagtttacgtagaactctgtcatgggaatcctcggtagtaaggtatcgagaaatatttgtg 12908131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 1100959 - 1100810
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || ||||||||| | ||    
T  1100959 tccaaaatcattcaagcatcaagtataggaggtatcaacacacttttgacgtaataaaaacaggtattgtgcattttattcgattgattttttggatatg 1100860  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| |||||||||||||||||||||| | |||||| || ||||||    
T  1100859 ttatgggtttctacgtcagttacgtagaactctgtcatggaaatcctcgg 1100810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 252
Target Start/End: Original strand, 45475609 - 45475781
Alignment:
Q  80 aaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgtta 179  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||         ||||||||||| ||||||||| ||| |||||||   || ||||    
T  45475609 aaaatcattcaagcatcaagcataggaggtaccaacacacttttgacg-aaagaaaacaggtattgagcattttaatccgttcatttttttccttcgtta 45475707  T
Q  180 tgggtatctacgtcagtt-acgtagaactttatcatgggaaacctcggaagtaaggcaccgagaaatacttgtg 252  Q
    ||||| | |||||||||| |||||||| | | |||||||||||||||| ||||||| || ||| ||||||||||    
T  45475708 tgggtttttacgtcagtttacgtagaattctgtcatgggaaacctcggtagtaaggtactgaggaatacttgtg 45475781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 3803448 - 3803301
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  3803448 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 3803350  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    |||||||||||||||| |||||||||||||  | ||||||||| |||||    
T  3803349 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcg 3803301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 27276256 - 27276115
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        || |||||| | |||||| ||| || ||||||||| | |     
T  27276256 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaagtattgtgcattttattcgattgattttttggctatt 27276158  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaa 219  Q
    |||||||||||||||||| |||||||||||  | |||||||||    
T  27276157 ttatgggtatctacgtcaattacgtagaaccctgtcatgggaa 27276115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 41183013 - 41182952
Alignment:
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  41183013 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcg 41182952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 41053461 - 41053349
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||| ||| |    
T  41053461 catcaaatcttgatccaaattcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgagcattttaatccgttca 41053363  T
Q  164 ttttttggttttgt 177  Q
    ||||||||||||||    
T  41053362 ttttttggttttgt 41053349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 5335040 - 5335201
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | |    
T  5335040 catcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtca 5335138  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  5335139 ttttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 5335201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 10624358 - 10624198
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  10624358 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 10624260  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  10624259 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 10624198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 24749843 - 24749894
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24749843 tccaaaatcattcaagcatcaagcataagaggtatcaacacacttttgacgt 24749894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 38945923 - 38946077
Alignment:
Q  71 ttttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttg 170  Q
    ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | | || ||||||||    
T  38945923 ttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgattcattttttg 38946021  T
Q  171 gttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
      | | ||| ||||||||||||| ||||||||||||| | |||||| || ||||||    
T  38946022 cgtgttttaggggtatctacgtctgttacgtagaactctgtcatggaaatcctcgg 38946077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 213345 - 213185
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||| ||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  213345 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaaaacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 213247  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  213246 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 213185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 18003165 - 18003102
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  18003165 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 18003102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 41560185 - 41560248
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  41560185 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 41560248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 12905618 - 12905544
Alignment:
Q  284 actgtctgcataatcagttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||  ||||| ||  || |||||||||||||    
T  12905618 actgtctgcataaccagttttctcggcagttaactgcagccgatttttcaatttctcggcagttaactgccgagg 12905544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 7263211 - 7263359
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| || ||||||||||| ||||||||||||||| ||||||||        ||||||||| |  ||||| ||  || |||||||  || |     
T  7263211 tccaaaatcattcaatcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgctttttattcaattgatttttttattatt 7263309  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  7263310 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 7263359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 39794156 - 39794304
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||| | | || ||||||   || |     
T  39794156 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttagttgattgatttttgtattatt 39794254  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| ||||||| |||||  | ||||||||| ||||||    
T  39794255 ttatgggtatctacgtgagttacgcagaaccctgtcatgggaatcctcgg 39794304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 45479798 - 45479871
Alignment:
Q  284 actgtctgcataatcagttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgag 357  Q
    |||||||||||||||| ||||||||||| |||||| |||||||||||  ||||| ||  || ||||||||||||    
T  45479798 actgtctgcataatcaattttctcggcaattaactacagtcgattttttaatttctcggcagttaactgccgag 45479871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 34910117 - 34910179
Alignment:
Q  67 caaattttgctccaaaatcatttaagcatc-aagcataagaggtatcaacacacttttgacgt 128  Q
    ||||| |||||||||||||||| ||||||| || | || ||||||||||||||||||||||||    
T  34910117 caaatcttgctccaaaatcattgaagcatcaaatcctaggaggtatcaacacacttttgacgt 34910179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 24749933 - 24749982
Alignment:
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  24749933 ttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 24749982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 23001078 - 23001032
Alignment:
Q  73 ttgctccaaaatcatttaagcatcaagcataagaggtatcaacacac 119  Q
    |||||||||||||||| ||||||||  |||| |||||||||||||||    
T  23001078 ttgctccaaaatcattgaagcatcagtcataggaggtatcaacacac 23001032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 45475566 - 45475596
Alignment:
Q  10 catcatcaactttcataccacttccatccaa 40  Q
    |||||||||||||||||||||||||||||||    
T  45475566 catcatcaactttcataccacttccatccaa 45475596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 39798416 - 39798453
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgc 320  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  39798416 actgtctgcataatcagttttcctcggcagttaactgc 39798453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 47061053 - 47061261
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  47061053 catcatcaacttccataccacttccatccaatccccaaatccaatattttttttcatcaaatattgatccaaaatcattcaagcatcaagcataggaggt 47061152  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||        ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  47061153 atcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgtagaactct 47061251  T
Q  210 atcatgggaa 219  Q
     |||||||||    
T  47061252 gtcatgggaa 47061261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 47741917 - 47742043
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||| | ||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||        ||||||||||| ||||||||| ||| |    
T  47741917 catcaattcttgatccaaaatcattcaagcatcaagcataggaggtatcaagacacttttgacgt-aaaaaaacaggtattgagcattttaatccgttca 47742015  T
Q  164 ttttttggttttgttatgggtatctacg 191  Q
    |||||||||||| |||||||||||||||    
T  47742016 ttttttggtttttttatgggtatctacg 47742043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 36185974 - 36186038
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  36185974 catcaagttttgctccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 36186038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 18105554 - 18105712
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | | || ||    
T  18105554 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgattgat 18105652  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 224  Q
    ||||||| | | ||| ||||||||||||||||||| ||||||  | ||||||||| ||||    
T  18105653 tttttgggtgttttaggggtatctacgtcagttacatagaaccctgtcatgggaatcctc 18105712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 45763560 - 45763720
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  45763560 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 45763658  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  45763659 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 45763720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 10708173 - 10708110
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  10708173 atcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 10708110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 30786705 - 30786863
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  30786705 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 30786803  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 224  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||    
T  30786804 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctc 30786863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 42499603 - 42499732
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  42499603 tccaaaatcattgaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 42499701  T
Q  177 ttatgggtatctacgtcagttacgtagaact 207  Q
    |||| ||||||||||| ||||||||||||||    
T  42499702 ttataggtatctacgtgagttacgtagaact 42499732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 43033154 - 43033294
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  43033154 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 43033252  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||| | | ||| ||||||||||||||||||||||||||    
T  43033253 tttttgggtgttttaggggtatctacgtcagttacgtagaac 43033294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 618643 - 618580
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  618643 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 618580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 29593235 - 29593184
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  29593235 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 29593184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 15059797 - 15059945
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||  ||||||||         |||||||  | |||||| ||| || |||||||  || |     
T  15059797 tccaaaatcattcaagcatcaagcataggaggtatcaacacatatttgacgtaaaaaaat-aggtattatgcattttattcgattgatttttttattatt 15059895  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  15059896 ttatgggtatctacgtgagttacgtagaaccatgtcatgggaatcctcgg 15059945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 43624039 - 43623978
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgac 126  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  43624039 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgac 43623978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 30355264 - 30355317
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  30355264 ctcggcagttaactgcagccgatttttgaattcttcagcaattaactgccgagg 30355317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 10705343 - 10705309
Alignment:
Q  284 actgtctgcataatcagttttctcggcagttaact 318  Q
    |||||||||||||||||||||||||||||||||||    
T  10705343 actgtctgcataatcagttttctcggcagttaact 10705309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 40928930 - 40928967
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgc 320  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  40928930 actgtctgcataatcagttttcctcggcagttaactgc 40928967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 7363263 - 7363048
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  ||||||| ||||| ||||  ||||||||||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  7363263 catcatcaacttcaataccacctccattcaatccccaaattcaatattttttttcatcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 7363164  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||         |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7363163 atcaacacacttttgacgtaaaaaaat-aggtattgagcattttaatccgtttattttttggttttgttatgggtatctacgtcagttacgtagaactct 7363065  T
Q  210 atcatgggaaacctcgg 226  Q
     ||||||||||||||||    
T  7363064 gtcatgggaaacctcgg 7363048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 2052522 - 2052361
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| |||||| || ||| |    
T  2052522 catcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtcaaaaaa-caggtattgagcattttagtccgttca 2052424  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  2052423 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 2052361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 7361342 - 7361503
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||  |||||||||||| ||||||||| |||| |||||||||||||||||||||| |        ||||||||||| ||||||||| ||| |    
T  7361342 catcaaatcttaatccaaaatcattcaagcatcaaacataggaggtatcaacacacttttgacataaaaaaa-caggtattgagcattttaatccgttca 7361440  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  7361441 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 7361503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 26701944 - 26702159
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||||||||||||| |||||||   |||||| ||| |        |||||||| |||||||||||||||| |||||||||||||| |||||    
T  26701944 catcatcaactttcataccactttcatccaaaccccaaatccaaaaaaaaaattcatcaaatcttgctccaaaatcattcaagcatcaagcataggaggt 26702043  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtc-agttacgtagaactt 208  Q
    |||||||||||||||||||        ||||||||||| ||||||||| ||| ||||||||| |||||||||||| | |||||| | ||||||||||||     
T  26702044 atcaacacacttttgacgt--aaaaaacaggtattgagcattttaatctgttcattttttggctttgttatgggtttttacgtcaatttacgtagaactc 26702141  T
Q  209 tatcatgggaaacctcgg 226  Q
    | |||||| || ||||||    
T  26702142 tgtcatggaaatcctcgg 26702159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 31146557 - 31146716
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||         || ||||||| ||||||||| ||| ||    
T  31146557 atcaaatattgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaa--agatattgagcattttaatccgttcat 31146654  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||  ||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||    
T  31146655 tttttgagtttgttatgggtatctacgtcagttacgtagaactctgtcatgagaatcctcgg 31146716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 18606171 - 18606347
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||||||||||||  |||||| |||||        |||||||| ||| | |||||||||| |||||||||||||| |||||    
T  18606171 catcatcaacttccataccacttccatccaatccccaaatccaatatttttttccatcaaatcttgattcaaaatcattcaagcatcaagcataggaggt 18606270  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatc 187  Q
    |||||||||||||||||||        || |||||||| ||||||||  ||| |||||||||||||||||||||||||    
T  18606271 atcaacacacttttgacgt-aaaaaaacaagtattgagcattttaatacgttcattttttggttttgttatgggtatc 18606347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 28250064 - 28250223
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||| |||||||||  ||||||||||||||| |||||||        ||||||||| | |||||| ||| || ||    
T  28250064 atcaatttttgatccaaaatcattcaagcgtcaagcatagaaggtatcaacacactattgacgtaaaaaaa-caggtattgtgcattttattcgattgat 28250162  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    ||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  28250163 tttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcg 28250223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 18347196 - 18347356
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | | || ||    
T  18347196 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgattcat 18347294  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||| || | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  18347295 ttttggggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 18347356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 24218144 - 24218260
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| ||||||||| ||||| |||  ||||||||||||        ||||||||  ||||||||||||||| |||||||||||||| |||||    
T  24218144 catcatcaacttccataccactcccatctaatccccaaattcaatatttttt--catcaaatcatgctccaaaatcattgaagcatcaagcataggaggt 24218241  T
Q  110 atcaacacacttttgacgt 128  Q
    |||||||||||| ||||||    
T  24218242 atcaacacacttctgacgt 24218260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 23985954 - 23985756
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| ||| |||||| ||||||||  |||||| |||||        |||||||| ||||| |||||||||| |||||||||||||| ||| |    
T  23985954 catcatcaacttccattccactttcatccaatccccaaatccaatattttttt-catcaaatcttgcttcaaaatcattcaagcatcaagcataggagct 23985856  T
Q  110 atcaacacacttttgacgtnnnnnnnn---caggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    || | |||||||||| |||           ||||||||||| ||||||||| |||||||||| |  |||||||||||| || ||||||||||||||||||    
T  23985855 attagcacacttttggcgtaaaaaaaaaatcaggtattgagtattttaatccgtttatttttagcatttgttatgggtttcaacgtcagttacgtagaac 23985756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 2260293 - 2260175
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||| ||||||||||||||  ||||||  |||         |||||||| |||||||||||||||| ||||||||| |||| | |||    
T  2260293 catcatcaacttccataacacttccatccaatccccaaatctaattttttttttcatcaaatcttgctccaaaatcattgaagcatcaaacataggcggt 2260194  T
Q  110 atcaacacacttttgacgt 128  Q
    |||||||||||||||||||    
T  2260193 atcaacacacttttgacgt 2260175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 1612640 - 1612577
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||| ||||| | |||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  1612640 atcaatttttgattcaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 1612577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 13388579 - 13388449
Alignment:
Q  95 tcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtca 194  Q
    ||||||||| |||||||||||||||| |||| ||        ||||||||| | |||||| ||| || ||||||||| | | ||||||||| ||||||||    
T  13388579 tcaagcataggaggtatcaacacactgttgatgtaaaaaaa-caggtattgtgcattttattcgattgattttttgggtgttttatgggtaactacgtca 13388481  T
Q  195 gttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||  | ||||||||| ||||||    
T  13388480 gttacgtagaaccctgtcatgggaatcctcgg 13388449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 1612543 - 1612475
Alignment:
Q  163 attttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagta 231  Q
    ||||||||| | | ||| |||||||||||| |||||||||||||  | ||||||||| |||||| ||||    
T  1612543 attttttgggtgttttaggggtatctacgttagttacgtagaaccctgtcatgggaatcctcggcagta 1612475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 11689 - 11475
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| ||||||||||| ||||||   |||||| |||||        ||||||||||||||| ||||||||| |||||||||||||| |||||    
T  11689 catcatcaacttccataccacttc-atccaaaccccaaatccaatattttttttcatcaaattttgctctaaaatcattcaagcatcaagcatacgaggt 11591  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    ||||||||||||||||| |        ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  11590 atcaacacacttttgacataaaaaaa-caggtattgagcattttaatcggtttattttttggttttgttataggtatctacgtcagttacgtagaactct 11492  T
Q  210 atcatgggaaacctcgg 226  Q
     ||||||||| ||||||    
T  11491 gtcatgggaatcctcgg 11475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 7208 - 7047
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||| ||| |    
T  7208 catcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttca 7110  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  7109 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaatcctcgg 7047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 7168209 - 7168357
Alignment:
Q  141 tattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagtaaggcaccga 240  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||    
T  7168209 tattgagcattttaatcggtttattttttggttttgttatgagtatctacgtcagttacgtagaactctgtcatgggaaacctcggtagtaaggtaccga 7168308  T
Q  241 gaaatacttgtgnnnnnnntttcacaccgaaaaaatgacagctactgtc 289  Q
    |||| |||||||       ||||||| |||||||||| |||||||||||    
T  7168309 gaaaaacttgtgaaaaaattttcacaacgaaaaaatggcagctactgtc 7168357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 18205912 - 18206125
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| ||||||||||||||||||   |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  18205912 catcatcaacttccataccacttccatccaaaccccaaatccaatattttttt-catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 18206010  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    || ||||||||||||||||        ||| ||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| |    
T  18206011 attaacacacttttgacgtaaaaaa--cagatattgagcattttaatccattcattttttggttttgttatgggtatctacgtcagttacgtagaactct 18206108  T
Q  210 atcatgggaaacctcgg 226  Q
     ||||||||||||||||    
T  18206109 gtcatgggaaacctcgg 18206125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 2146850 - 2146689
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||| ||| |    
T  2146850 catcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtcaaaaaa-caggtattgagcattttaatccgttca 2146752  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||    
T  2146751 ttttttggttttgttatgggtatctatgtccgttacgtagaactctgtcatgggaaacctcgg 2146689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 39752970 - 39752756
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  ||||||| ||||| ||||  |||||| |||||        |||||||| ||| || ||||||||| ||| |||||||||| |||||    
T  39752970 catcatcaacttcaataccacctccattcaatccccaaatccaatattttttttcatcaaatcttgatctaaaatcattcaagtatcaagcataggaggt 39752871  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    ||||||||||||||||| |        ||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| |    
T  39752870 atcaacacacttttgacataaaaaa--caggtattgagcattttaatccattcattttttggttttgttatgggtatctacgtcagttacgtagaactct 39752773  T
Q  210 atcatgggaaacctcgg 226  Q
     ||||||||||||||||    
T  39752772 gtcatgggaaacctcgg 39752756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 43369963 - 43370121
Alignment:
Q  67 caaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattt 166  Q
    ||||| ||| |||||||||||| |||||| ||||||| |||||||||||||||||||||| |        ||||||||||  ||||||||| ||| ||||    
T  43369963 caaatcttgatccaaaatcattcaagcatgaagcataggaggtatcaacacacttttgacctaaaaaaa-caggtattgaacattttaatccgttcattt 43370061  T
Q  167 tttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||| |||||||||| |||||||||||||| | |||||| |||| ||||    
T  43370062 tttggttttgttatgagtatctacgttagttacgtagaactctgtcatggaaaacttcgg 43370121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 35966630 - 35966502
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| ||||        ||||||||| | |||||| ||| || ||||||||||| ||    
T  35966630 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttaacgtaaaaaaa-caggtattgtgcattttattcgattgattttttggttatg 35966532  T
Q  177 ttatgggtatctacgtcagttacgtagaac 206  Q
    |||||||| |||||||||||||||||||||    
T  35966531 ttatgggtttctacgtcagttacgtagaac 35966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 22577843 - 22578007
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnn-caggtattgagaattttaatcggttt 162  Q
    |||||||| |||| |||||||||||  ||||||||||||| |||||||||||||||||||||  |         ||||||||||  ||||||||| |||     
T  22577843 catcaaatcttgcaccaaaatcattcgagcatcaagcataggaggtatcaacacacttttgatataaaaaaaaacaggtattgaacattttaatccgttc 22577942  T
Q  163 attttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||| || |||||||||||| | |||||||| |||||||||||| ||||||||||| ||||||    
T  22577943 atttttaggctttgttatgggtttttacgtcagtttacgtagaactctatcatgggaatcctcgg 22578007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 4866560 - 4866678
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||| ||||| ||||||||||||||| |||  |||||| |||||        |||||||| || ||||||||||||| |||||||||||||||||| |    
T  4866560 catcattaacttccataccacttccatctaatccccaaatccaatattttttttcatcaaatctttctccaaaatcattgaagcatcaagcataagagat 4866659  T
Q  110 atcaacacacttttgacgt 128  Q
    |||||||||||||||||||    
T  4866660 atcaacacacttttgacgt 4866678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 8423726 - 8423566
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | |  | ||    
T  8423726 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgagtcat 8423628  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  8423627 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 8423566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 1114936 - 1115084
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  1114936 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 1115034  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||| | |||||||||||||  | ||||||||| ||||||    
T  1115035 ttatgggtatctacatgagttacgtagaaccctgtcatgggaatcctcgg 1115084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 30305462 - 30305302
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  30305462 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 30305364  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  30305363 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 30305302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 32378814 - 32378654
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  32378814 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 32378716  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  32378715 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 32378654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 32432769 - 32432609
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  32432769 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 32432671  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  32432670 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 32432609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 43689894 - 43689830
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  43689894 catcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 43689830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 20546961 - 20547110
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta-ttttttggtttt 175  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||        ||||||| | | |||||| ||| || | |||||||| | |    
T  20546961 tccaaaatcattcaagcatcaagcataggaggtatcaatacacttttgacgt-aaaaaaacaggtatagtgcattttattcgattgatttttttgggtat 20547059  T
Q  176 gttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
     ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  20547060 tttacgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 20547110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 7340247 - 7340387
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  7340247 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 7340345  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||| | | ||| ||||||||||||||||||||||||||    
T  7340346 tttttgggtgttttaggggtatctacgtcagttacgtagaac 7340387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 45454653 - 45454741
Alignment:
Q  138 aggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| | |||||| ||| || ||||||||||| |||||||||| |||||||||||||||||||||  | ||||||||| ||||||    
T  45454653 aggtattgtgcattttattcgattgattttttggttatgttatgggtttctacgtcagttacgtagaaccctgtcatgggaatcctcgg 45454741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 31958000 - 31958051
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  31958000 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 31958051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 41744597 - 41744549
Alignment:
Q  80 aaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  41744597 aaaatcattcaagcatcaagcataggaggtatcaacatacttttgacgt 41744549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 41855416 - 41855363
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||| ||||||| ||||| ||| ||| |||||||||||||    
T  41855416 ctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgagg 41855363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 42605260 - 42605312
Alignment:
Q  306 tcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    ||||||||||||||||| ||||||| ||||| ||| ||| |||||||||||||    
T  42605260 tcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgagg 42605312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 39553 - 39514
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgcag 322  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  39553 actgtctgcataatcagttttcctcggcagttaactgcag 39514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 1116192 - 1116230
Alignment:
Q  285 ctgtctgcataatcagtttt-ctcggcagttaactgcag 322  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  1116192 ctgtctgcataatcagtttttctcggcagttaactgcag 1116230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 41276881 - 41276938
Alignment:
Q  301 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||||||| ||| |||  ||||  |||||| |||||||||||||    
T  41276881 ttttctcggcagttaactgcagccgaatttctaattcctcaacagttaactgccgagg 41276938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 22657263 - 22657327
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||| | |||| |||||||||||   ||||||| | || ||||||||||||||||||||||||    
T  22657263 catcaagtcttgccccaaaatcattggtgcatcaatcctaggaggtatcaacacacttttgacgt 22657327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 29929553 - 29929795
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| ||||||||||| |||||||  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  29929553 catcatcaacttccataccacttctatccaatccccaaatccaatattttttt-catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 29929651  T
Q  110 atcaacacacttttgacgtnnnnnnnn---caggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    |||||||||||||||||||           ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||    
T  29929652 atcaacacacttttgacgtaaaaaaaaaatcaggtattgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgt--aac 29929749  T
Q  207 tttatcatgggaaacctcggaagtaaggcaccgagaaatacttgtg 252  Q
      | ||||||||| |||||| ||||||| |||||| ||||||||||    
T  29929750 actgtcatgggaatcctcggtagtaaggtaccgaggaatacttgtg 29929795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 29978707 - 29978949
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| ||||||||||| |||||||  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  29978707 catcatcaacttccataccacttctatccaatccccaaatccaatattttttt-catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 29978805  T
Q  110 atcaacacacttttgacgtnnnnnnnn---caggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    |||||||||||||||||||           ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||  |||    
T  29978806 atcaacacacttttgacgtaaaaaaaaaatcaggtattgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacgt--aac 29978903  T
Q  207 tttatcatgggaaacctcggaagtaaggcaccgagaaatacttgtg 252  Q
      | ||||||||| |||||| ||||||| |||||| ||||||||||    
T  29978904 actgtcatgggaatcctcggtagtaaggtaccgaggaatacttgtg 29978949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 7837722 - 7837935
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  ||||||| ||||| |||| |||||||||||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  7837722 catcatcaacttcaataccacctccattcaatctccaaattcaatattttttt-catcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 7837820  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||| ||        ||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||| |    
T  7837821 atcaacacacttttgaagtaaaaaaa-caggtattgagcattttaatccgttcattttttagttttgttatgggtatctacgtcagttacgtagtactct 7837919  T
Q  210 atcatgggaaacctcg 225  Q
     |||||||||||||||    
T  7837920 gtcatgggaaacctcg 7837935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 6505869 - 6505707
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| | | |||||||||||| |||| ||||||||| ||||||||||||||| ||||||||         |||||||||| ||||||||| ||| |    
T  6505869 catcaaatctagatccaaaatcattcaagcgtcaagcataggaggtatcaacacacatttgacgtaaaaaaaaaaggtattgagcattttaatccgttca 6505770  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  6505769 ttttttgattttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 6505707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 9582677 - 9582836
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||||||| |    
T  9582677 catcaaatcttgctccaaaatcattgaagcatcaagcataggaggtatcaacacacttttgacgt--aaaaaacaggtattgagcattttaatcggttga 9582774  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    | ||| | ||||||||||||| | ||||||| ||||||| |||| | ||||||||| |||||    
T  9582775 tatttagcttttgttatgggtttttacgtcaattacgtataactctgtcatgggaatcctcg 9582836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 7842892 - 7842746
Alignment:
Q  79 caaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgtt 178  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||         |||||||| | |||||| ||| || ||||||||| | ||||    
T  7842892 caaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaat-aggtattgtgcattttattcgattgattttttggctatgtt 7842794  T
Q  179 atgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||| |||||||||||||||||||||  ||||||||||| ||||||    
T  7842793 atgggtttctacgtcagttacgtagaaccctatcatgggaatcctcgg 7842746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 13747613 - 13747453
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||| ||| |||||||||||||||| |||||||        ||||||||| | |||||| ||| || ||    
T  13747613 atcaatttttgatccaaaatcattcaagcatcaagtataggaggtatcaacacactattgacgtaaaaaaa-caggtattgtgcattttattcgattgat 13747515  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  13747514 tttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 13747453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 14398725 - 14398853
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || ||||||||| | |     
T  14398725 tccaaaatcattcaagcatcaaacataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgtgcattttattcgattgattttttggctatt 14398823  T
Q  177 ttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||||||||||||||||||||||||||    
T  14398824 ttatgggtatctacgtcagttacgtagaac 14398853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 21956093 - 21955955
Alignment:
Q  68 aaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttatttt 167  Q
    |||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||  ||||| | |  ||||||||    
T  21956093 aaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgaacatttttacccatttatttt 21955995  T
Q  168 ttggttttgttatgggtatctacgtcagttacgtagaact 207  Q
    ||||||||  ||||||||||||| | ||||||||||||||    
T  21955994 ttggtttttgtatgggtatctacctgagttacgtagaact 21955955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 46993124 - 46992971
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||| | ||| |||||||||||| ||  |||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||| ||| |    
T  46993124 catcaattcttgatccaaaatcattcaattatcaagcataggaggtatcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttca 46993026  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 219  Q
    |||||||||||| |||||||||||||| ||| |||| ||||||  | |||||||||    
T  46993025 ttttttggtttt-ttatgggtatctacatcaattacatagaacactgtcatgggaa 46992971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 23443012 - 23442865
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||         |||||||| | |||||| ||| || |||||| || | |     
T  23443012 tccaaaatcattcaagcatcaagcataggaggtatcaacacagttttgacgtaaaaaat--aggtattgtgcattttattcgattgatttttgggctatt 23442915  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||||||||||| |||||| || ||||||||| ||||||    
T  23442914 ttatgggtatctacgtcagttacatagaaccttgtcatgggaatcctcgg 23442865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 6741043 - 6741203
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | |  | ||    
T  6741043 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgagtcat 6741141  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  6741142 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 6741203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 9429740 - 9429580
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||| ||| |||||||||||||||| |||||||        ||||||||| | |||||| | | || ||    
T  9429740 atcaatttttgatccaaaatcattcaagcatcaagtataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgattgat 9429642  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  9429641 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 9429580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 36817403 - 36817255
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| | | || ||||||||| | |     
T  36817403 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgtgcattttatttgattgattttttgggtatt 36817305  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||| ||||||||||| ||||||| || ||||| ||| ||||||    
T  36817304 ttatgggtatttacgtcagttaggtagaaccttgtcatgagaatcctcgg 36817255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 48250746 - 48250602
Alignment:
Q  80 aaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgtta 179  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||||||        ||||||||| | |||||| ||| || ||||||||| | | |||    
T  48250746 aaaatcattcaagcatcaagcataggaggtatcaacatacttttgacgtaaaaaaa-caggtattgggcattttattcgattgattttttgggtatttta 48250648  T
Q  180 tgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    ||||| |||||||||||||||||||||  | ||||||||| |||||    
T  48250647 tgggtttctacgtcagttacgtagaaccctgtcatgggaatcctcg 48250602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 50953471 - 50953624
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| ||        ||||||||| | |||||| ||| || |||||||  || |     
T  50953471 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgatgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 50953569  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcggaagta 231  Q
    |||||||||||||||| |||||| ||||||  | ||||||||| |||||| ||||    
T  50953570 ttatgggtatctacgtgagttacatagaaccctgtcatgggaatcctcggtagta 50953624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 30947546 - 30947386
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  30947546 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 30947448  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  30947447 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 30947386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 2745110 - 2745059
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  2745110 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 2745059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 8160888 - 8160825
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  8160888 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 8160825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 16444790 - 16444938
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||| ||||| | |||||| | | || ||||||   || |     
T  16444790 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacagctattgtgcattttatttgattgatttttgtattatt 16444888  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  16444889 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 16444938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 3948909 - 3948963
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacac 119  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||    
T  3948909 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacac 3948963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 66969 - 66922
Alignment:
Q  284 actgtctgcataatcagttttctcggcagttaactgcagtcgattttg 331  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||    
T  66969 actgtctgcataatcagttttctcggtagttaactgcagccggttttg 66922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 45101873 - 45101926
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||| || |||| |||||  ||||||||||||||||||||    
T  45101873 ctcggcagttaactgcagccggtttttgaattcctcaacaattaactgccgagg 45101926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 50957669 - 50957708
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgcag 322  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  50957669 actgtctgcataatcagttttcctcggcagttaactgcag 50957708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 8160773 - 8160728
Alignment:
Q  181 gggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  8160773 gggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 8160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 46344985 - 46344932
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||| ||||||| |||||  || ||| |||||||||||||    
T  46344985 ctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgagg 46344932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 52570587 - 52570644
Alignment:
Q  301 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    ||||||||| ||||||||||||||| |||| ||||| |||  || |||||||||||||    
T  52570587 ttttctcggtagttaactgcagtcggtttttgaattcttcggcagttaactgccgagg 52570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 53273223 - 53273279
Alignment:
Q  299 agttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccga 356  Q
    ||||| ||||||||||||||||||||| ||||  |||||||  |||||||||||||||    
T  53273223 agtttcctcggcagttaactgcagtcggtttt-aaattttttgacaattaactgccga 53273279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 9582599 - 9582563
Alignment:
Q  301 ttttctcggcagttaactgcagtcgattttggaattt 337  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  9582599 ttttctcggcagttaactgcagtcggtttttgaattt 9582563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 52567815 - 52567759
Alignment:
Q  301 ttttctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgag 357  Q
    |||||||||||||||| ||||| ||||||| ||||| |||  || ||||||||||||    
T  52567815 ttttctcggcagttaagtgcagccgatttttgaattattcggcagttaactgccgag 52567759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 1075 - 913
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||||||| |||||||| ||| |||||||||| ||| | ||||||||||||||||||||||        |||| |||||| ||||||||| ||| |    
T  1075 catcaaattttgatccaaaattattcaagcatcaagtataggtggtatcaacacacttttgacgtaaaaaaaacagggattgagcattttaatccgttca 976  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  975 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcgg 913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 15804 - 16017
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  ||||||| ||||| ||||  ||||||||||||        |||||||| ||| |||||||||||| ||||||||||||||||||||    
T  15804 catcatcaacttcaataccacctccattcaatccccaaattcaatatttttt--catcaaatcttgatccaaaatcattcaagcatcaagcataagaggt 15901  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||        ||||||||| | ||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| |    
T  15902 atcaacacacttttgacgtaaaaaaa-caggtattgtgcattttaatccgttcattttttgattttgttatgggtatctacgtcagttacgtagaactat 16000  T
Q  210 atcatgggaaacctcgg 226  Q
     ||||||||||| ||||    
T  16001 gtcatgggaaacttcgg 16017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 4204157 - 4203943
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    ||||||||||||  |||| ||||||||||| |  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  4204157 catcatcaacttcaatactacttccatccagtccccaaatccaataatttttttcatcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 4204058  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||||||||        ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||  |    
T  4204057 atcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttcattttttggttttgttatgggtatctacgtcagttacatagaaccat 4203959  T
Q  210 atcatgggaaacctcg 225  Q
     ||| |||||||||||    
T  4203958 gtcaagggaaacctcg 4203943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 33993459 - 33993620
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||| | |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||        ||||||||||| ||||||||| ||  |    
T  33993459 catcaattcttgctccaaaattattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgtaca 33993557  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  33993558 ttttttggtcttgttatgggtatctacgtcagttatgtagaactttgtcacgggaaacctcgg 33993620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 31098827 - 31098666
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||||||||| |||||||| |||||  |||||||||||||||||||||||        || |||||||| ||||||||| ||| |    
T  31098827 catcaaatcttgatccaaaatcattcaagcatcatgcatagaaggtatcaacacacttttgacgtaaaaaaa-catgtattgagcattttaatctgttaa 31098729  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | | ||| ||||||||||    
T  31098728 ttttttgattttgttatgggtatctacgtcagttacgtagaactctgttatgcgaaacctcgg 31098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 28387461 - 28387609
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| |        ||||||||||| ||||||||| ||| ||||||||||| |     
T  28387461 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacataaaaaaa-caggtattgagcattttaatccgttcattttttggttatt 28387559  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  28387560 ttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 28387609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 27867727 - 27867579
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||||| |||||| ||| || ||||||||| | |     
T  27867727 tccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgtaaaaaaa-caggtattgagcattttattcgattgattttttgggtgtt 27867629  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  27867628 ttatgggtatctacgtcagttacgtagaaccctatcatgggaatcctcgg 27867579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 34123801 - 34123653
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || ||||||||||| ||    
T  34123801 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgtaaaaaaa-caggtattgtgcattttattcgattgattttttggttatg 34123703  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| |||||||||||||||||||||  | ||||||||| ||||||    
T  34123702 ttatgggtttctacgtcagttacgtagaacactgtcatgggaatcctcgg 34123653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 18538227 - 18538071
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt-nnnnnnnncaggtattgagaattttaatcggttt 162  Q
    |||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||         ||||||||||| |||||||||  ||     
T  18538227 catcaaatcttgctccaaaatcattcaagcataaagcataggaggtatcaacacacttttgacgtaaaaaaaaacaggtattgagcattttaatccattc 18538128  T
Q  163 attttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatggga 218  Q
    ||||||||| |||||||||||| | |||||||| |||||||||||| | ||||||||    
T  18538127 attttttggctttgttatgggtttttacgtcagtttacgtagaactctgtcatggga 18538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 25896961 - 25896815
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || ||||||||| | |     
T  25896961 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt---aaaaacaggtattgtgcattttattcgattgattttttgggtatt 25896865  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  25896864 ttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 25896815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 30354343 - 30354149
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||| |||||||||   ||||||||||        ||||||||||||| ||||||||||| ||| |||||||||| ||| |    
T  30354343 catcatcaacttccataccactttcatccaattcttaaattcaatatttttt--catcaaattttgcaccaaaatcattcaagtatcaagcataggagat 30354246  T
Q  110 atcaacacacttttgacgtnnnnnnnn-caggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    |||||||||||||| ||||         ||  ||||||  ||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||    
T  30354245 atcaacacacttttcacgtaaaaaaaaacaactattgaacattttaatcagtttattttttggttt-gttatgggtttctacgtcagttacgtagaac 30354149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 7800880 - 7800731
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||        ||||||||||| ||||||| |  || |    
T  7800880 catcaaatcttgatccaaaatcattcaagcatcaaacataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgagcattttaaccctttca 7800782  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcat 214  Q
    |||||||||||||||||| || | ||||||||||||||  |||| ||||||    
T  7800781 ttttttggttttgttatgagtctttacgtcagttacgtcaaactctatcat 7800731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 13567982 - 13567834
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| ||||||||||||||  ||||||||||||||| |||||||        ||||||||| | |||||| ||| || ||||||||| | |     
T  13567982 tccaaaatcattcaagcatcaagcatagaaggtatcaacacactattgacgtaaaaaaa-caggtattgtgcattttattcgattgattttttgggtgtt 13567884  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  13567883 ttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 13567834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 34077959 - 34078107
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| ||| || ||||||||| | |     
T  34077959 tccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaagacaggtattgtgcattttattcgattgattttttggatgtt 34078057  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||||||||| ||||||||||||||||  | ||||||||| ||||||    
T  34078058 ttatgggtatctatgtcagttacgtagaaccctgtcatgggaatcctcgg 34078107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 37820774 - 37820614
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | | || ||    
T  37820774 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgattcat 37820676  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  37820675 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 37820614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 28886312 - 28886172
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | | || ||    
T  28886312 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgattgat 28886214  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||| | | ||| ||||||||||||||||||||||||||    
T  28886213 tttttgggtgttttaggggtatctacgtcagttacgtagaac 28886172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 7021777 - 7021618
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||| ||| ||||||||| |||| |||||||||||||||| |||||||        |||||||||   |||||| ||| || ||    
T  7021777 atcaatttttgatccaaaataattcaagcatcaaacataggaggtatcaacacactattgacgtaaaaaaa-caggtattgttcattttattcgattgat 7021679  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    ||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  7021678 tttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcg 7021618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 34944022 - 34944083
Alignment:
Q  67 caaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  34944022 caaatcttgctccaaaatcattgaagcatcaagcataggaggtatcaacacacttttgacgt 34944083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 38860082 - 38859934
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||| | | || ||||||   || |     
T  38860082 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttagttgattgatttttgtattatt 38859984  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  38859983 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 38859934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 1035376 - 1035427
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  1035376 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 1035427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 21999234 - 21999297
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    ||||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  21999234 atcaaatcttactccaaaattattgaagcatcaagcataggaggtatcaacacacttttgacgt 21999297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 11033343 - 11033195
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| ||||||||| |||| ||||||||||||||| ||||||||        ||||||||| | |||||| | | || ||||||   || |     
T  11033343 tccaaaatcattcaagcatcaaacataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttagttgattgatttttgtattatt 11033245  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  11033244 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 11033195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 20285193 - 20285253
Alignment:
Q  68 aaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||| |||||||||||||||||||||||||| | ||  |||||||||||||||||||||||    
T  20285193 aaatcttgctccaaaatcatttaagcatcaatcctagaaggtatcaacacacttttgacgt 20285253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 14280004 - 14280059
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacact 120  Q
    ||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  14280004 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacact 14280059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 1039782 - 1039819
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgc 320  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  1039782 actgtctgcataatcagttttcctcggcagttaactgc 1039819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 11029104 - 11029067
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgc 320  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11029104 actgtctgcataatcagttttcctcggcagttaactgc 11029067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 17965897 - 17965844
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||||||| |||  ||||  || |||||||||||||||||    
T  17965897 ctcggcagttaactgcagtcgaatttttaattcctcgacaattaactgccgagg 17965844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 18538360 - 18538413
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||| || |||| |||||  || |||||||||||||||||    
T  18538360 ctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagg 18538413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 38855811 - 38855774
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgc 320  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38855811 actgtctgcataatcagttttcctcggcagttaactgc 38855774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 252
Target Start/End: Original strand, 13174017 - 13174205
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||| |||| || ||||||||| ||| |    
T  13174017 catcaaatcttgctccaaaatcattcaagcatcaagcatatgaggtatcaacacacttttgacgt-aaaaaaacagatatttagcattttaatccgttca 13174115  T
Q  164 ttttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcggaagtaaggcaccgagaaatacttgtg 252  Q
    |||||||| |||||||||||| | |||||||| |||||||||||| ||||||||||| |||||| ||||||| ||| || ||||||||||    
T  13174116 ttttttggctttgttatgggtttttacgtcagtttacgtagaactctatcatgggaatcctcggtagtaaggtaccaaggaatacttgtg 13174205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 22345384 - 22345595
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||| ||||| ||||  |||||| |||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  22345384 catcatcaacttccataccacgtccattcaatccccaaatccaatatattttttcatcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 22345483  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaacttt 209  Q
    |||||||||||||| ||||        ||||||||||| ||||||||  ||| |||||||| ||||||||||||||| |||||||||||||||||||| |    
T  22345484 atcaacacactttttacgtaaaaaaaacaggtattgagcattttaattcgttcattttttgattttgttatgggtatttacgtcagttacgtagaactct 22345583  T
Q  210 atcatgggaaac 221  Q
     |||||| ||||    
T  22345584 gtcatggaaaac 22345595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 8459992 - 8459831
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||         |||||||||| ||||||||| ||| |    
T  8459992 catcaaatcttgatccaaaatcattcaagcatcaagcataagaggtatcaacacacttttgaggtaaaaaaag-aggtattgagcattttaatccgttca 8459894  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||||||||||||||||| ||||||||||| | | |||| |||||||||||    
T  8459893 ttttttggttttgttatgggtatctacgtctgttacgtagaattctgtcataggaaacctcgg 8459831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 21944270 - 21944116
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||        ||||||||||| |||||||||||||||    
T  21944270 catcaaatcttgctccaaaatcattcaagcatcaaacataggaggtatcaacacacttttaacgtaaataaa-caggtattgagcattttaatcggttta 21944172  T
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaa 219  Q
    |||||||| ||||||||| || |||||||||||||||||||||  |||||||||||    
T  21944171 ttttttggatttgttatgcgtttctacgtcagttacgtagaaccctatcatgggaa 21944116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 19499059 - 19498845
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnn-catcaaattttgctccaaaatcatttaagcatcaagcataagagg 108  Q
    |||||||||||| ||||||||||||||| |||  |||||| |||||         |||||||| ||||||||||  |||| |||||||||||||| ||||    
T  19499059 catcatcaacttccataccacttccatcaaatccccaaatccaatatttttttctcatcaaatcttgctccaaatacattcaagcatcaagcataggagg 19498960  T
Q  109 tatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcagttacgtagaactt 208  Q
    ||||||||||||||||||||        ||||||||||| ||||||||||||||||||||| |||| ||||||| | ||||||||||||||| ||||||     
T  19498959 tatcaacacacttttgacgtaaaaaa--caggtattgagcattttaatcggtttatttttttgtttggttatggat-tctacgtcagttacgcagaacta 19498863  T
Q  209 tatcatgggaaacctcgg 226  Q
    | ||||||||||| ||||    
T  19498862 tgtcatgggaaacttcgg 19498845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 250
Target Start/End: Original strand, 4516184 - 4516373
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnnca--ggtattgagaattttaatcggtt 161  Q
    |||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||         |  ||||||||| ||||||||| |||    
T  4516184 catcaaatcttgctccaaaatcattcaagcatcaaacataggaggtatcaacacacttttgacgtaaaaaaaaaataggtattgagcattttaatccgtt 4516283  T
Q  162 tattttttggttttgttatgggtatctacgtcag-ttacgtagaactttatcatgggaaacctcggaagtaaggcaccgagaaatacttg 250  Q
     ||||||||| |||||||||||| | ||||| || |||||||||||| | |||||| ||||||||| ||||||| ||| || ||||||||    
T  4516284 cattttttggctttgttatgggtttttacgttagtttacgtagaactctgtcatggaaaacctcggtagtaaggtaccaaggaatacttg 4516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 46973382 - 46973545
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||        || |||||||| ||||||||  ||| |    
T  46973382 catcaaattttgctccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaagtattgagcattttaattcgttca 46973480  T
Q  164 ttttttggttttgttatgggtatctacgtcag-ttacgtagaactt-tatcatgggaaacctcgg 226  Q
    |||||||| ||||||||| || | |||||||| ||||||||||||| | |||||| |||||||||    
T  46973481 ttttttggctttgttatgagtttttacgtcagtttacgtagaacttctgtcatggaaaacctcgg 46973545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 1654871 - 1654987
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||        |||||||| ||| |||||||||||| |||||||||||||| |||||    
T  1654871 catcatcaacttccataccacttccatccaatccccaaattcaatattttttttcatcaaatcttgatccaaaatcattcaagcatcaagcataggaggt 1654970  T
Q  110 atcaacacacttttgac 126  Q
    |||||||||||||||||    
T  1654971 atcaacacacttttgac 1654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 50117655 - 50117527
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || ||||||||||| ||    
T  50117655 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaggtattgtgcattttattcgattgattttttggttatg 50117557  T
Q  177 ttatgggtatctacgtcagttacgtagaac 206  Q
    |||||||| |||||||||||||||||||||    
T  50117556 ttatgggtttctacgtcagttacgtagaac 50117527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 23914022 - 23914164
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| |        ||||||||| | |||||| ||| || ||||||||| | |     
T  23914022 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacataaaaaaaacaggtattgtgcattttattcgattgattttttgggtatt 23914121  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaa 219  Q
    ||||||||||||||||||||||||||||||  | |||||||||    
T  23914122 ttatgggtatctacgtcagttacgtagaaccctgtcatgggaa 23914164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 36076453 - 36076295
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||||| ||| ||||||| |||| ||||||||||||||  || ||||||||||||||||||||        |||||||| |  |||||||||  || ||    
T  36076453 atcaaatcttgatccaaaaacattcaagcatcaagcatagaagatatcaacacacttttgacgtaaaaaaa-caggtattaaacattttaatccattcat 36076355  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 224  Q
    |||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||    
T  36076354 tttttgattttgttatgggtatctacgtcagttacgtagaactctgtcatggaaaacctc 36076295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 29356585 - 29356425
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| ||| || ||    
T  29356585 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttattcgattgat 29356487  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||||||||||||||||||||| ||||||||  | ||||||||| ||||||    
T  29356486 tttttgggtgttttatgggtatctacgtcagttgcgtagaaccctgtcatgggaatcctcgg 29356425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 37015085 - 37015233
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||||||        || |||||| | |||||| ||| || ||||||||||| ||    
T  37015085 tccaaaatcatccaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacaagtattgtgcattttattcgattgattttttggttatg 37015183  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| ||||||||||||||||||||   | ||||||||| ||||||    
T  37015184 ttatgggtttctacgtcagttacgtagaatcctgtcatgggaatcctcgg 37015233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 5078109 - 5078250
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  5078109 tccaaaatcattcaagcatcaagcataagaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 5078207  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaa 219  Q
    |||||||||||||||| |||||||||||||  | |||||||||    
T  5078208 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaa 5078250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 20349611 - 20349771
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| | |  | ||    
T  20349611 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttatttgagtcat 20349709  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  20349710 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 20349771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 41453991 - 41454131
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| | |||||| ||| || ||    
T  41453991 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcattttattcgattgat 41454089  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||| | | ||||||||||||| |||| |||||||||||    
T  41454090 tttttgggtgttttatgggtatctatgtcaattacgtagaac 41454131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 3948355 - 3948195
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  3948355 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 3948257  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  3948256 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 3948195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 15047462 - 15047622
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||| ||        ||||||||| | |||||| | | || ||    
T  15047462 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgatgt-aaaaaaacaggtattgtgcattttatttgattcat 15047560  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||| ||||||||||||||||  | ||||||||| ||||||    
T  15047561 tttttgggtgttttaggggtatctatgtcagttacgtagaaccctgtcatgggaatcctcgg 15047622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 38776019 - 38775859
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  38776019 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 38775921  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    ||||||| | | ||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  38775920 tttttgggtgttttaggggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 38775859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 22397982 - 22398135
Alignment:
Q  72 tttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttgg 171  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||| | | || ||||||       
T  22397982 tttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttagttgattgatttttgta 22398080  T
Q  172 ttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    || | |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  22398081 ttattttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 22398135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 3983267 - 3983407
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  3983267 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 3983365  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||| | ||||| |||||| |||||||||||||||||||    
T  3983366 tttttgggtgtgttaggggtatttacgtcagttacgtagaac 3983407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 252
Target Start/End: Complemental strand, 7981027 - 7980846
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggttta 163  Q
    |||||||| |||||||||||||||| ||||||||||        |||||||||||||||||||||        ||||||||||| ||||||||| ||| |    
T  7981027 catcaaatcttgctccaaaatcattcaagcatcaag--------gtatcaacacacttttgacgtaaaaaaa-caggtattgagcattttaatccgttca 7980937  T
Q  164 tttttt-ggttttgttatgggtatctacgtcagtt-acgtagaactttatcatgggaaacctcggaagtaaggcaccgagaaatacttgtg 252  Q
    |||||| || |||||||| | | | |||||||||| ||||| |||| | ||||||||||| |||| ||||||| || ||| ||||||||||    
T  7980936 tttttttggctttgttatcgatttttacgtcagtttacgtataactctgtcatgggaaacttcggtagtaaggtactgaggaatacttgtg 7980846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 31945754 - 31945614
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  31945754 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 31945656  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||| | | ||| ||||||||||||||||||||||||||    
T  31945655 tttttgggtgttttaggggtatctacgtcagttacgtagaac 31945614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 6562041 - 6561990
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  6562041 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 6561990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 13629586 - 13629734
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||| ||||| | |||||| | | || ||||||   || |     
T  13629586 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacagctattgtgcattttatttgattgatttttgtattatt 13629684  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  13629685 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 13629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 44620996 - 44620849
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| || ||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  44620996 tccaaaatcattcaatcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttt-attatt 44620899  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| ||||||| |||||||||||||  | ||||||||| ||||||    
T  44620898 ttatgggtttctacgtgagttacgtagaaccctgtcatgggaatcctcgg 44620849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 30905938 - 30905989
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  30905938 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 30905989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 27569095 - 27569150
Alignment:
Q  73 ttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||| | ||| ||||||||| | |||||||||||||||||||||||||||    
T  27569095 ttgctccaaagtaattgaagcatcaatcctaagaggtatcaacacacttttgacgt 27569150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 44465761 - 44465812
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  44465761 tccaaaatcattcaagcatcaagcataggaggtatcaacagactattgacgt 44465812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 16247621 - 16247557
Alignment:
Q  64 catcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||| |||||||||||||||| ||||||||  | ||  || ||||||||||||||||||||    
T  16247621 catcaaatcttgctccaaaatcattgaagcatcactcctagtagatatcaacacacttttgacgt 16247557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 30910007 - 30910045
Alignment:
Q  285 ctgtctgcataatcagtttt-ctcggcagttaactgcag 322  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  30910007 ctgtctgcataatcagttttcctcggcagttaactgcag 30910045  T

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Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 36072464 - 36072430
Alignment:
Q  284 actgtctgcataatcagttttctcggcagttaact 318  Q
    ||||||||||||||||||||| |||||||||||||    
T  36072464 actgtctgcataatcagttttttcggcagttaact 36072430  T

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Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 44465852 - 44465898
Alignment:
Q  180 tgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||||||||||||||  | ||||||||| ||||||    
T  44465852 tgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcgg 44465898  T

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Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 6561959 - 6561910
Alignment:
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  6561959 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 6561910  T

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Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 29352329 - 29352256
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccga 356  Q
    ||||||||||||||||||||| ||||||||||||||| || ||  |||  ||||  || |||||||||||||||    
T  29352329 actgtctgcataatcagttttcctcggcagttaactggagccggatttcaaattcctcgacaattaactgccga 29352256  T

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Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 36908626 - 36908573
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||| || |||| ||||| ||| ||| |||||||||||||    
T  36908626 ctcggcagttaactgcagccggtttttgaattcttcgacagttaactgccgagg 36908573  T

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Target: scaffold0057 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 23190 - 22976
Alignment:
Q  10 catcatcaactttcataccacttccatccaatttccaaattcaatannnnnnnncatcaaattttgctccaaaatcatttaagcatcaagcataagaggt 109  Q
    |||||||||||| |||||||||| |||||||   |||||| ||||         |||||||| |||||||||||||||| |||||||||||||| |||||    
T  23190 catcatcaacttccataccactttcatccaaaccccaaatccaatcaaaaaattcatcaaatcttgctccaaaatcattcaagcatcaagcataggaggt 23091  T
Q  110 atcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttgttatgggtatctacgtcag-ttacgtagaactt 208  Q
    |||||||||||||||||||        ||||||||||| ||||||||| | | ||||||||| |||||||| ||| | |||||||| ||||||||||||     
T  23090 atcaacacacttttgacgt-aaaaaaacaggtattgagcattttaatc-gctcattttttggctttgttat-ggtttttacgtcagtttacgtagaactc 22994  T
Q  209 tatcatgggaaacctcgg 226  Q
    | ||||||||| ||||||    
T  22993 tgtcatgggaatcctcgg 22976  T

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Target: scaffold0116 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 11466 - 11612
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| || ||||||||| | |     
T  11466 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-acaaaaacaggtattgtgcattttattcgattgattttttggctatt 11564  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctc 224  Q
    ||||||||||||||||||||||||||||||  | ||||||||| ||||    
T  11565 ttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctc 11612  T

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Target: scaffold0361 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 4281 - 4133
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||        || |||||| | |||||| ||| || ||||||||||| |     
T  4281 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt-aaaaaaacatgtattgtgcattttattcgtttgattttttggttatt 4183  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||| ||||||||||||||||||||   | ||||||||| ||||||    
T  4182 ttatgggtttctacgtcagttacgtagaatcctgtcatgggaatcctcgg 4133  T

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Target: scaffold0038 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 50226 - 50385
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||| |||||||||  ||||||||||||||| |||||||        ||||||||| | |||||| ||| || ||    
T  50226 atcaatttttgatccaaaatcattcaagcgtcaagcatagaaggtatcaacacactattgacgtaaaaaaa-caggtattgtgcattttattcgattgat 50324  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    ||||||| | | ||||||||||||||||||||||||||||||  | ||||||||| |||||    
T  50325 tttttgggtgttttatgggtatctacgtcagttacgtagaaccctgtcatgggaatcctcg 50385  T

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Target: scaffold0794 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 5555 - 5616
Alignment:
Q  164 ttttttggttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  5555 ttttttggttttgttatgggtatctacgtcagttacgtagaactctgtcatgggaaacctcg 5616  T

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Target: scaffold0494 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 1051 - 1199
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttggttttg 176  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||        ||||||||| | |||||| ||| || |||||||  || |     
T  1051 tccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt-aaaaaaacaggtattgtgcattttattcgattgatttttttattatt 1149  T
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  1150 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 1199  T

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Target: scaffold0494; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 5304 - 5341
Alignment:
Q  284 actgtctgcataatcagtttt-ctcggcagttaactgc 320  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  5304 actgtctgcataatcagttttcctcggcagttaactgc 5341  T

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Target: scaffold0260 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 11934 - 12074
Alignment:
Q  65 atcaaattttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttat 164  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||        ||||||||| |  ||||| | |  | ||    
T  11934 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt-aaaaaaacaggtattgtgcgttttatttgagtcat 12032  T
Q  165 tttttggttttgttatgggtatctacgtcagttacgtagaac 206  Q
    ||||||| | | ||| ||||||||||||||||||||||||||    
T  12033 tttttgggtgttttaggggtatctacgtcagttacgtagaac 12074  T

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Target: scaffold0341 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 17231 - 17180
Alignment:
Q  77 tccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgt 128  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  17231 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 17180  T

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Target: scaffold0341; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 17149 - 17100
Alignment:
Q  177 ttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    |||||||||||||||| |||||||||||||  | ||||||||| ||||||    
T  17149 ttatgggtatctacgtgagttacgtagaaccctgtcatgggaatcctcgg 17100  T

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Target: scaffold0744 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 307 - 154
Alignment:
Q  72 tttgctccaaaatcatttaagcatcaagcataagaggtatcaacacacttttgacgtnnnnnnnncaggtattgagaattttaatcggtttattttttgg 171  Q
    |||| |||||||||||| ||||||||||||||  |||||||||||||| ||||||||         |||||||| | |||||| | |||| ||||| |      
T  307 tttgatccaaaatcattcaagcatcaagcatagaaggtatcaacacacatttgacgtaaaaaaat-aggtattgtgcattttattgggttgattttatta 209  T
Q  172 ttttgttatgggtatctacgtcagttacgtagaactttatcatgggaaacctcgg 226  Q
    || | |||||||||||||||| ||||| |||||||  | ||||||||| ||||||    
T  208 ttattttatgggtatctacgtgagttatgtagaaccctgtcatgggaatcctcgg 154  T

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Target: scaffold0618 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 3933 - 3880
Alignment:
Q  305 ctcggcagttaactgcagtcgattttggaatttttcaacaattaactgccgagg 358  Q
    |||||||||||||||||| ||||||| |||||  || ||| |||||||||||||    
T  3933 ctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgagg 3880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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