View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_high_45 (Length: 402)

Name: NF17833_high_45
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_high_45
NF17833_high_45
[»] chr8 (13 HSPs)
chr8 (17-349)||(28427993-28428322)
chr8 (189-339)||(28427102-28427259)
chr8 (290-349)||(27642415-27642474)
chr8 (290-349)||(42001540-42001599)
chr8 (290-357)||(24535849-24535916)
chr8 (189-252)||(27641733-27641796)
chr8 (290-357)||(35588287-35588354)
chr8 (290-347)||(3152939-3152996)
chr8 (269-357)||(21543596-21543684)
chr8 (204-252)||(24535756-24535804)
chr8 (269-340)||(24536139-24536210)
chr8 (269-340)||(24536561-24536632)
chr8 (189-252)||(42000840-42000903)
[»] chr5 (17 HSPs)
chr5 (195-357)||(28109267-28109428)
chr5 (264-349)||(42057272-42057357)
chr5 (290-357)||(22964972-22965039)
chr5 (271-357)||(18966819-18966905)
chr5 (290-349)||(12950717-12950776)
chr5 (290-342)||(16930974-16931026)
chr5 (294-349)||(12936566-12936621)
chr5 (290-357)||(30471122-30471189)
chr5 (290-342)||(2898256-2898308)
chr5 (290-349)||(21038288-21038347)
chr5 (189-250)||(17646465-17646526)
chr5 (113-170)||(18966562-18966619)
chr5 (294-352)||(42036095-42036153)
chr5 (290-347)||(17645039-17645096)
chr5 (290-338)||(27809479-27809527)
chr5 (113-165)||(30463408-30463460)
chr5 (272-340)||(41473103-41473171)
[»] chr4 (17 HSPs)
chr4 (203-357)||(2265846-2265999)
chr4 (269-338)||(35218196-35218265)
chr4 (195-357)||(41534674-41534835)
chr4 (290-349)||(11014608-11014667)
chr4 (290-357)||(33436433-33436500)
chr4 (290-349)||(40731557-40731616)
chr4 (290-342)||(50910500-50910552)
chr4 (290-349)||(9617512-9617571)
chr4 (189-252)||(11015311-11015374)
chr4 (194-252)||(31433445-31433503)
chr4 (269-338)||(2266235-2266304)
chr4 (292-349)||(35143730-35143787)
chr4 (290-349)||(38194283-38194342)
chr4 (189-252)||(40732246-40732309)
chr4 (290-349)||(52074383-52074442)
chr4 (195-252)||(35218766-35218823)
chr4 (191-255)||(52073695-52073759)
[»] chr2 (10 HSPs)
chr2 (195-357)||(40440034-40440194)
chr2 (290-349)||(6172344-6172403)
chr2 (294-349)||(15629572-15629627)
chr2 (290-349)||(31298562-31298621)
chr2 (290-349)||(44655610-44655669)
chr2 (189-251)||(44656310-44656372)
chr2 (189-252)||(10601940-10602003)
chr2 (189-252)||(15630239-15630302)
chr2 (189-252)||(31297871-31297934)
chr2 (290-349)||(44328834-44328893)
[»] chr7 (9 HSPs)
chr7 (264-357)||(14815598-14815691)
chr7 (264-357)||(15262593-15262686)
chr7 (264-349)||(47610908-47610993)
chr7 (290-349)||(31602649-31602708)
chr7 (290-342)||(25694971-25695023)
chr7 (189-252)||(25609521-25609584)
chr7 (189-252)||(31602070-31602133)
chr7 (269-338)||(25694657-25694726)
chr7 (269-338)||(35248533-35248602)
[»] scaffold0004 (2 HSPs)
scaffold0004 (189-339)||(128120-128277)
scaffold0004 (189-255)||(127404-127470)
[»] chr3 (12 HSPs)
chr3 (290-349)||(48097647-48097706)
chr3 (290-357)||(314302-314369)
chr3 (291-338)||(46508075-46508122)
chr3 (290-349)||(54921680-54921739)
chr3 (269-339)||(4811689-4811759)
chr3 (189-252)||(45266287-45266350)
chr3 (295-357)||(37526173-37526235)
chr3 (290-342)||(45265744-45265796)
chr3 (290-349)||(47641269-47641328)
chr3 (189-252)||(54922365-54922428)
chr3 (191-252)||(46507965-46508026)
chr3 (192-252)||(48097942-48098002)
[»] chr6 (10 HSPs)
chr6 (271-357)||(25915141-25915227)
chr6 (290-357)||(4221941-4222008)
chr6 (189-252)||(26839017-26839080)
chr6 (290-342)||(9904400-9904452)
chr6 (290-357)||(9477176-9477243)
chr6 (189-252)||(12776321-12776384)
chr6 (290-349)||(22018726-22018785)
chr6 (290-357)||(26838131-26838198)
chr6 (269-342)||(12776654-12776727)
chr6 (290-342)||(12776967-12777019)
[»] chr1 (13 HSPs)
chr1 (269-338)||(5865300-5865369)
chr1 (290-349)||(34814787-34814846)
chr1 (31-107)||(20807643-20807719)
chr1 (290-349)||(7999108-7999166)
chr1 (264-349)||(47357172-47357259)
chr1 (290-342)||(51935696-51935748)
chr1 (290-357)||(5865751-5865818)
chr1 (290-349)||(48899181-48899240)
chr1 (192-253)||(48899700-48899761)
chr1 (189-252)||(51936392-51936455)
chr1 (118-164)||(24204970-24205016)
chr1 (204-252)||(6131748-6131796)
chr1 (192-248)||(48899550-48899606)
[»] scaffold0113 (1 HSPs)
scaffold0113 (204-252)||(47430-47478)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 28428322 - 28427993
Alignment:
Q  17 ttttcttcttccaaaaacacacatggaaaatacgtttttgcctccgatagaagttaactatcgttcagtcttttcggctgaagttaactactgcgactca 116  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28428322 tttttttcttccaaaaa-acacatggaaaatacatttttgcctccgacagaagttaactgtcgttcagtcttttcggctgaagttaactactgcgactca 28428224  T
Q  117 gctgcacttaagttcgattcctgacagagcattaattgtgattttgcgcattttggtnnnnnnnnnnnnnnntcgagacttatttgaaatgctacgaaac 216  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||  ||               ||||||||||||||||||||||||||||    
T  28428223 gctgcacttaaattcgatttctgacagagcattaattgtgattttgcgcatttcagtcaaaaaacaaaaaaatcgagacttatttgaaatgctacgaaac 28428124  T
Q  217 tttacagatattctatatgtattattatagaggtgtatgcnnnnnnnccagttcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgac 316  Q
    |||||||||||||||||||||||| ||||||||| | |||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28428123 tttacagatattctatatgtatta-tatagaggtctctgc-aaaaaaccagctcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgac 28428026  T
Q  317 acattaaaaattcatatttaatccatacgttgt 349  Q
    |||||||||||||||||||||||||||| ||||    
T  28428025 acattaaaaattcatatttaatccatactttgt 28427993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 339
Target Start/End: Original strand, 28427102 - 28427259
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgtatgcnnnnnnnccagttcaaaattcaatttctaagt 288  Q
    ||||| |||||||| |||||||| |||||||| ||||  |||||||||||| |||||||||||| |||        ||||||||||||| ||||||||||    
T  28427102 tcgaggcttatttggaatgctacaaaactttatagatcctctatatgtatttttatagaggtgtctgcaaaaaag-cagttcaaaattcgatttctaagt 28427200  T
Q  289 c--------gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatc 339  Q
    |        ||||||||| ||||||||| ||||||| ||||||||||||||||| ||||    
T  28427201 cgatgttttgatgttttgatttcttgagtttttgacgcattaaaaattcatattcaatc 28427259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 27642474 - 27642415
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  27642474 gatgttttggtttcttgagttattgacgcattaaaaattcatatttaatccatccgttgt 27642415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 42001599 - 42001540
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  42001599 gatgttttggtttcttgagttattgacgcattaaaaattcatatttaatccatccgttgt 42001540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 24535849 - 24535916
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||  | |||||| |||||||    
T  24535849 gatgttttggtttcttgagtttttggcgcattaaaaattcatatttaatctgtccgttgtcggaaaat 24535916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 27641796 - 27641733
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||| |||||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  27641796 tcgagacttattcgaaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgt 27641733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 35588287 - 35588354
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| | ||| |  |||||||||| ||||||||| ||| ||||||||||||||    
T  35588287 gatgttttggtttcttgagttattggcgtattaaaaattaatatttaattcatccgttgttggaaaat 35588354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 3152939 - 3152996
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgtt 347  Q
    |||||||| |||||||||| |||||   ||||||||||||||||||||||||| ||||    
T  3152939 gatgttttagtttcttgagtttttggtgcattaaaaattcatatttaatccatccgtt 3152996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 21543684 - 21543596
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||||| ||||||| || || ||||||||||| |||| || ||| | ||| ||||||||||||||||||||| | | |||||| |||||    
T  21543684 tcaaaaatcaatttttaggttgatgttttggtgtcttaagttttaggcacgttaaaaattcatatttaatccgtcccttgttgaaaaat 21543596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 24535756 - 24535804
Alignment:
Q  204 aatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    ||||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  24535756 aatgctacgaaactttacagatcctctatatggatttttatagaggtgt 24535804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 24536139 - 24536210
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatcc 340  Q
    ||||||||| |||| || ||  |||||||||| |||| |  ||| |||||||||||||||||||||||||||    
T  24536139 tcaaaattcgatttttaggttaatgttttggtgtcttcaattttagacacattaaaaattcatatttaatcc 24536210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 24536561 - 24536632
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatcc 340  Q
    ||||||||| |||| || ||  |||||||||| |||| |  ||| |||||||||||||||||||||||||||    
T  24536561 tcaaaattcgatttttaggttaatgttttggtgtcttcaattttagacacattaaaaattcatatttaatcc 24536632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 42000903 - 42000840
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||||| |||| |||||||| || || ||  |||||||||||| ||||||||||||    
T  42000903 tcgagacttatttggaatgttacgaaacatttcacatcatctatatgtatttttatagaggtgt 42000840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 195 - 357
Target Start/End: Complemental strand, 28109428 - 28109267
Alignment:
Q  195 cttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgtatgcnnnnnnnccagttcaaaattcaatttctaagtcgatgt 294  Q
    |||||||  |||||||||||||||||||||   |||||||||||| |||||||| ||| |||       |||| ||||||||||||||||| ||||||||    
T  28109428 cttatttagaatgctacgaaactttacagaccctctatatgtatttttatagagatgtttgcaaaaca-ccagctcaaaattcaatttctaggtcgatgt 28109330  T
Q  295 tttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||| ||||||||| ||||| |||||||||| |||||||||||||||| |||||| |||||||    
T  28109329 tttgatttcttgagtttttggcacattaaaagttcatatttaatccatccgttgtcggaaaat 28109267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 42057357 - 42057272
Alignment:
Q  264 ccagttcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  42057357 ccagatcaaaatacaatttctaggtcgatgttttggtttcttgagttattgacgcattaaaaattcatatttaatccatccgttgt 42057272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 22964972 - 22965039
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||| |||||    
T  22964972 gatgttttggtttcttgagttattgacgcattaaaaattcatatttaatccatccgttgttgaaaaat 22965039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 18966905 - 18966819
Alignment:
Q  271 aaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||| |||| || |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||  | |||||| |||||||    
T  18966905 aaaattcgatttttaggtcgatgttttggtttcttgagtttttggcacatcaaaaattcatatttaatctgttcgttgtcggaaaat 18966819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 12950717 - 12950776
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  12950717 gatgttttggtttcttgagttattgacgcattaaaaattcatatttaatccatccgttgt 12950776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 16931026 - 16930974
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||||||    
T  16931026 gatgttttggtttcttgagttattgacgcattaaaaattcatatttaatccat 16930974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 12936566 - 12936621
Alignment:
Q  294 ttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  12936566 ttttggtttcttgagttattgacgcattaaaaattcatatttaatccatccgttgt 12936621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 30471189 - 30471122
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||||||| |||||||||| ||||| | ||||||||||||||| ||||||||| |||||| |||||||    
T  30471189 gatgttttagtttcttgagtttttggcgcattaaaaattcataattaatccatccgttgtcggaaaat 30471122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 2898256 - 2898308
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    ||||||||||||||||||| | ||| | |||||||||||||||||||||||||    
T  2898256 gatgttttggtttcttgagttattggcgcattaaaaattcatatttaatccat 2898308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 21038288 - 21038347
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||||||||||| |||||| | ||||| ||||||||||||||||||||||| | ||||||    
T  21038288 gatgttttggttacttgagttattgacgcattaaaaattcatatttaatccttccgttgt 21038347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 17646465 - 17646526
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggt 250  Q
    |||||||||||| | |||| ||||||||||| |||||  |||||||||||| ||||||||||    
T  17646465 tcgagacttattcggaatgttacgaaacttttcagatcatctatatgtatttttatagaggt 17646526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 18966562 - 18966619
Alignment:
Q  113 ctcagctgcacttaagttcgattcctgacagagcattaattgtgattttgcgcatttt 170  Q
    |||||||||||||||||||| |||||  |||||||| |||||||||||| ||| ||||    
T  18966562 ctcagctgcacttaagttcggttcctagcagagcatcaattgtgattttacgcgtttt 18966619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 42036095 - 42036153
Alignment:
Q  294 ttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttgg 352  Q
    ||||||||||||||| ||||| | ||||||||| ||||||||||| ||| | |||||||    
T  42036095 ttttggtttcttgagtttttggcgcattaaaaaatcatatttaattcatcccttgttgg 42036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 17645039 - 17645096
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgtt 347  Q
    ||||||||||||||| ||| | | | | ||||||||||||||||||||||||| ||||    
T  17645039 gatgttttggtttctagagttataggcgcattaaaaattcatatttaatccatccgtt 17645096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 27809527 - 27809479
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaat 338  Q
    ||||||||||||||||||| | ||| | ||| |||||||||||||||||    
T  27809527 gatgttttggtttcttgagttattggcgcatcaaaaattcatatttaat 27809479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 30463408 - 30463460
Alignment:
Q  113 ctcagctgcacttaagttcgattcctgacagagcattaattgtgattttgcgc 165  Q
    |||| ||||||||||||||| |||||  |||||||| |||||||||| |||||    
T  30463408 ctcatctgcacttaagttcggttcctagcagagcatcaattgtgattatgcgc 30463460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 41473103 - 41473171
Alignment:
Q  272 aaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatcc 340  Q
    |||||||||||||| || |||||||| || || |||| ||| | | | |||||||||||||||||||||    
T  41473103 aaattcaatttctaggttgatgttttagtgtcatgagttttaggcgcgttaaaaattcatatttaatcc 41473171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 357
Target Start/End: Original strand, 2265846 - 2265999
Alignment:
Q  203 aaatgctacgaaactttacagatattctatatgtattattatagaggtgtatgcnnnnnnnccagttcaaaattcaatttctaagtcgatgttttggttt 302  Q
    |||||||| ||||||||||||||  ||||||||||||  ||||||||||  |||       |||| | ||||||| ||||||| |||||| |||| ||||    
T  2265846 aaatgctatgaaactttacagatcatctatatgtatttgtatagaggtgcttgcaaaaaa-ccagcttaaaattcgatttctaggtcgatattttagttt 2265944  T
Q  303 cttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||||| ||||||| ||||||||||||||||||||||| | |||||| |||||||    
T  2265945 cttgagtttttgacgcattaaaaattcatatttaatccgtccgttgtcggaaaat 2265999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 35218196 - 35218265
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaat 338  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||| |  ||||||||||||||||||||    
T  35218196 tcaaaattcgatttctaagttgatgttttggtttcttgagtttttggcgtattaaaaattcatatttaat 35218265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 357
Target Start/End: Complemental strand, 41534835 - 41534674
Alignment:
Q  195 cttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgtatgcnnnnnnnccagttcaaaattcaatttctaagtcgatgt 294  Q
    ||||||||||||||||| ||| ||||| |||   ||||||||||| ||||| |||||| ||        |||| ||||| ||||||||||| ||||||||    
T  41534835 cttatttgaaatgctacaaaattttacggatccactatatgtatttttataaaggtgtctg-taaaaaaccagctcaaacttcaatttctaggtcgatgt 41534737  T
Q  295 tttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||||||  ||||| ||||| | ||||||||||| || || ||||| | | ||||||||||||    
T  41534736 tttggttcattgagtttttggcgcattaaaaatttattttcaatccgtcccttgttggaaaat 41534674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 11014608 - 11014667
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  11014608 gatgttttggtttcttgagttattggcgcattaaaaattcatatttaatccatccgttgt 11014667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 33436433 - 33436500
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| | ||| | ||||||||||||| ||||||||||| |||||||| |||||    
T  33436433 gatgttttggtttcttgagttattggcgcattaaaaattcaaatttaatccatccgttgttgaaaaat 33436500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 40731557 - 40731616
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  40731557 gatgttttggtttcttgagttattggcgcattaaaaattcatatttaatccatccgttgt 40731616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 50910500 - 50910552
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    ||||||||||||||||||| | ||| | |||||||||||||||||||||||||    
T  50910500 gatgttttggtttcttgagttattgtcgcattaaaaattcatatttaatccat 50910552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 9617512 - 9617571
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||| ||||||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  9617512 gatgtgttggtttcttgagttattggcgcattaaaaattcatatttaatccatccgttgt 9617571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 11015311 - 11015374
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||| |||||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  11015311 tcgagacttattcgaaatgttacgaaacttttcaaatcatctatatgtatttttatagaggtgt 11015374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 31433503 - 31433445
Alignment:
Q  194 acttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  31433503 acttatttgaaatgatacgaaacttttcacatcatctatatgtatttttatagaggtgt 31433445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 2266235 - 2266304
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaat 338  Q
    |||||||| |||||||| |  ||||||||||| ||||||| ||| | | |||||||||||||||||||||    
T  2266235 tcaaaatttaatttctaggatgatgttttggtgtcttgagttttaggcgcattaaaaattcatatttaat 2266304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 35143787 - 35143730
Alignment:
Q  292 tgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||||| |||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  35143787 tgttttagtttcttgagttattggcgcattaaaaattcatatttaatccatccgttgt 35143730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 38194342 - 38194283
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| |  || | ||||||||||||||||||||| ||| ||||||    
T  38194342 gatgttttggtttcttgagttagtggcgcattaaaaattcatatttaattcatccgttgt 38194283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 40732246 - 40732309
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||||| |||| || |||||||| || ||  |||||||||||| ||||||||||||    
T  40732246 tcgagacttatttggaatgttatgaaacttttcacatcatctatatgtatttttatagaggtgt 40732309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 52074442 - 52074383
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||||||| |||||||||  | ||| | ||||||||||||||||||||||||| ||||||    
T  52074442 gatgttttagtttcttgaattattggcgcattaaaaattcatatttaatccatccgttgt 52074383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 35218823 - 35218766
Alignment:
Q  195 cttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    ||||||||||||||||||||| | |  ||||  |||||||||||| ||||||||||||    
T  35218823 cttatttgaaatgctacgaaattctgtagatcctctatatgtatttttatagaggtgt 35218766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 52073759 - 52073695
Alignment:
Q  191 gagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgtatg 255  Q
    |||||||||||| |||| ||||||||||| || ||  ||||||| |||| |||||||| ||||||    
T  52073759 gagacttatttggaatgttacgaaacttttcatatcatctatatatatttttatagagatgtatg 52073695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 357
Target Start/End: Original strand, 40440034 - 40440194
Alignment:
Q  195 cttatttgaaatgctacgaaactttacagatattctatatgtattatt-atagaggtgtatgcnnnnnnnccagttcaaaattcaatttctaagtcgatg 293  Q
    |||||| | ||||||||||||||||||||||  |||| ||||||| || |||||||||| ||         ||| ||||||||||||||||| ||||||     
T  40440034 cttattcggaatgctacgaaactttacagatcctctaaatgtattttttatagaggtgtctgaaaaaa---cagctcaaaattcaatttctaggtcgata 40440130  T
Q  294 ttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||| ||||| ||||| | ||||||||||||||||||||||||| | |||| |||||||    
T  40440131 ttttggtttattgagtttttggcgcattaaaaattcatatttaatccatccattgtcggaaaat 40440194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 6172344 - 6172403
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  6172344 gatgttttggtttcttgagttattgccgcattaaaaattcatatttaatccatccgttgt 6172403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 15629572 - 15629627
Alignment:
Q  294 ttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  15629572 ttttggtttcttgagttattggcgcattaaaaattcatatttaatccatccgttgt 15629627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 31298621 - 31298562
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | |||   ||||||||||||||||||||||||| ||||||    
T  31298621 gatgttttggtttcttgagttattggtgcattaaaaattcatatttaatccatccgttgt 31298562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 44655610 - 44655669
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||| |  |||||||||||||||||||||||| ||||||    
T  44655610 gatgttttggtttcttgagttattggcgtattaaaaattcatatttaatccatccgttgt 44655669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 44656310 - 44656372
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtg 251  Q
    |||||||||||| | |||| |||||||||||||| ||  |||||||||||| |||||||||||    
T  44656310 tcgagacttattcggaatgttacgaaactttacacatcatctatatgtatttttatagaggtg 44656372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 10601940 - 10602003
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||| | |||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  10601940 tcgagacttattcggaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgt 10602003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 15630239 - 15630302
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||||  |||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  15630239 tcgagacttatttagaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgt 15630302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 31297934 - 31297871
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||| | |||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  31297934 tcgagacttattcggaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgt 31297871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 44328834 - 44328893
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||||  || |||||||||||||||||| ||| ||||||    
T  44328834 gatgttttggtttcttgagttattgatgcactaaaaattcatatttaattcatccgttgt 44328893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 14815598 - 14815691
Alignment:
Q  264 ccagttcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||| | |||   ||||||||||||||||||||||||| | |||||| |||||    
T  14815598 ccagatcaaaattcaatttctaggtcaatgttttggtttcttgagttattggtgcattaaaaattcatatttaatccatccattgttgaaaaat 14815691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 15262593 - 15262686
Alignment:
Q  264 ccagttcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||| | |||   ||||||||||||||||||||||||| | |||||| |||||    
T  15262593 ccagatcaaaattcaatttctaggtcaatgttttggtttcttgagttattggtgcattaaaaattcatatttaatccatccattgttgaaaaat 15262686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 47610993 - 47610908
Alignment:
Q  264 ccagttcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||| |||||||||||||| || || || |||||||||||||||| | ||| | |||| |||||||||||||||||||| ||||||    
T  47610993 ccagctcaaaattcaatttttaggttgacgttttggtttcttgagttattggcgcatttaaaattcatatttaatccatccgttgt 47610908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 31602708 - 31602649
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||  | ||||| ||||||||||||||||||||||||| ||||||    
T  31602708 gatgttttggtttcttgaattattgacgcattaaaaattcatatttaatccatccgttgt 31602649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 25695023 - 25694971
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    |||||||| |||||||||| ||||| | |||||||||||||||||||||||||    
T  25695023 gatgttttagtttcttgagtttttggcgcattaaaaattcatatttaatccat 25694971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 25609584 - 25609521
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    ||||| |||||||| |||||||||||||||||||| |  ||| |||||||| ||||||| ||||    
T  25609584 tcgaggcttatttggaatgctacgaaactttacaggtcctctgtatgtatttttatagatgtgt 25609521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 31602070 - 31602133
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||| ||||||| |||||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  31602070 tcgacacttattcgaaatgttacgaaactttgcacatcatctatatgtatttttatagaggtgt 31602133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 25694726 - 25694657
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaat 338  Q
    |||||||||||||| || || |||||||| || |||| |  ||| ||||| |||||||||||||||||||    
T  25694726 tcaaaattcaatttttaggttgatgttttcgtgtcttaaattttagacacgttaaaaattcatatttaat 25694657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 35248533 - 35248602
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaat 338  Q
    ||||||||| |||| || ||||||||||| |||||||||| ||| |   | |||||||||||||||||||    
T  35248533 tcaaaattcgatttttaggtcgatgtttttgtttcttgagttttaggtgcgttaaaaattcatatttaat 35248602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 128277 - 128120
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgtatgcnnnnnnnccagttcaaaattcaatttctaagt 288  Q
    ||||| |||||||| |||||||| |||||||| ||||  |||||||||||| |||||||||||| |||        ||||||||||||| ||||||||||    
T  128277 tcgaggcttatttggaatgctacaaaactttatagatcctctatatgtatttttatagaggtgtctgcaaaaaag-cagttcaaaattcgatttctaagt 128179  T
Q  289 c--------gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatc 339  Q
    |        ||||||||| ||||||||| ||||||| ||||||||||||||||| ||||    
T  128178 cgatgttttgatgttttgatttcttgagtttttgacgcattaaaaattcatattcaatc 128120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 127470 - 127404
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgtatg 255  Q
    |||||||||||| | |||| ||| ||||||| || ||  |||||||||||| |||||||||||||||    
T  127470 tcgagacttattcggaatgttacaaaacttttcacatcatctatatgtatttttatagaggtgtatg 127404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 48097647 - 48097706
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  48097647 gatgttttggtttcttgagttattgacacattaaaaattcatatttaatccatccgttgt 48097706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 314369 - 314302
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||| | |||||||    
T  314369 gatgttttggtttcttgagtttttgacgcattaaaaattaatatttaatccatccgttttcggaaaat 314302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 46508075 - 46508122
Alignment:
Q  291 atgttttggtttcttgaggttttgacacattaaaaattcatatttaat 338  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  46508075 atgttttggtttcttgagtttttgacgcattaaaaattcatatttaat 46508122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 54921680 - 54921739
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  54921680 gatgttttggtttcttgagttattggcgcattaaaaattcatatttaatccatccgttgt 54921739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 4811689 - 4811759
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatc 339  Q
    ||||||||| ||||||| |||||||||||||||| || || ||||||| | ||||||||||||||| ||||    
T  4811689 tcaaaattctatttctaggtcgatgttttggtttttttagtttttgacgcgttaaaaattcatattgaatc 4811759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 45266287 - 45266350
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||| | |||||||||||||||||| || ||  |||||||||||| ||||||||||||    
T  45266287 tcgagacttagtcgaaatgctacgaaactttgcacatcatctatatgtatttttatagaggtgt 45266350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 37526235 - 37526173
Alignment:
Q  295 tttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    |||||||||||| | ||||| | |||||||||||||||||||||| || |||||| |||||||    
T  37526235 tttggtttcttgcgtttttggcgcattaaaaattcatatttaatcaatccgttgtcggaaaat 37526173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 45265744 - 45265796
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    ||||||||||||| ||||| | ||| | |||||||||||||||||||||||||    
T  45265744 gatgttttggttttttgagttattggcgcattaaaaattcatatttaatccat 45265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 47641269 - 47641328
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||||||| |||||||||  | ||| | ||||||||||||||||||||||||| ||||||    
T  47641269 gatgttttagtttcttgaattattggcgcattaaaaattcatatttaatccatccgttgt 47641328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 54922365 - 54922428
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||| | |||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  54922365 tcgagacttattaggaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgt 54922428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 46507965 - 46508026
Alignment:
Q  191 gagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||| | ||||||| ||||||||||| ||  ||||||| |||| ||||||||||||    
T  46507965 gagacttattcggaatgctatgaaactttacatatcctctatatatatttttatagaggtgt 46508026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 48097942 - 48098002
Alignment:
Q  192 agacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    ||||||||| | |||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  48097942 agacttattcggaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgt 48098002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 25915141 - 25915227
Alignment:
Q  271 aaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||| || ||||||||||||||||||  ||||||| | ||||||||||||||| ||||||| | ||||||| ||||    
T  25915141 aaaattcaatttctaggtagatgttttggtttcttgattttttgacgcgttaaaaattcatattcaatccatcccttgttgggaaat 25915227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 4221941 - 4222008
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| | ||| | |||||||||| |||||||||||||| |||||||| |||||    
T  4221941 gatgttttggtttcttgagttattggcgcattaaaaatccatatttaatccatccgttgttgaaaaat 4222008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 26839017 - 26839080
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    ||||||||||||||||||| ||||||||||| || ||  |||||||||||| ||||||||||||    
T  26839017 tcgagacttatttgaaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgt 26839080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 9904452 - 9904400
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    ||||||||||||||||||| | ||| | |||||||||||||||||||||||||    
T  9904452 gatgttttggtttcttgagttattggcgcattaaaaattcatatttaatccat 9904400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 9477243 - 9477176
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| ||||| | ||| ||||||||||||||||||| | | |||| |||||||    
T  9477243 gatgttttggtttcttgagtttttggcgcatcaaaaattcatatttaatccgtcctttgtcggaaaat 9477176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 12776384 - 12776321
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||||| |||| ||| ||||||| || ||  |||||||||||| ||||||||||||    
T  12776384 tcgagacttatttggaatgttacaaaacttttcacatcatctatatgtatttttatagaggtgt 12776321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 22018726 - 22018785
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||||  || |||||||||||||||||| ||| ||||||    
T  22018726 gatgttttggtttcttgagttattgatgcactaaaaattcatatttaattcatccgttgt 22018785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 26838131 - 26838198
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||| ||||||||| | ||| | ||||||||||||||| |||||| || |||||||| |||||    
T  26838131 gatgttttgatttcttgagttattggcgcattaaaaattcatacttaatctatccgttgttgaaaaat 26838198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Complemental strand, 12776727 - 12776654
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    |||||||||||||| || || |||||||| || |||| || ||| | | | |||||||||||||||||||||||    
T  12776727 tcaaaattcaatttttacgttgatgttttcgtgtcttaagttttaggcgcgttaaaaattcatatttaatccat 12776654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 12777019 - 12776967
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    ||||||||||||||||||| | ||| | ||||||||| | |||||||||||||    
T  12777019 gatgttttggtttcttgagttattggcgcattaaaaaattatatttaatccat 12776967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 5865369 - 5865300
Alignment:
Q  269 tcaaaattcaatttctaagtcgatgttttggtttcttgaggttttgacacattaaaaattcatatttaat 338  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||  | ||| |||||||||||||||    
T  5865369 tcaaaattcaatttctaagttgatgttttggtttcttgagtttttgatgcgttagaaattcatatttaat 5865300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 34814787 - 34814846
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  34814787 gatgttttggtttcttgagttattgacgcattaaaaattcatatttaatccatccgttgt 34814846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 20807719 - 20807643
Alignment:
Q  31 aaacacacatggaaaatacgtttttgcctccgatagaagttaactatcgttcagtcttttcggctgaagttaactac 107  Q
    ||||||||||||||||||||||||||||||| |  |  |||||||| |||||||| |||||||| | ||||||||||    
T  20807719 aaacacacatggaaaatacgtttttgcctccaacggtggttaactaccgttcagttttttcggcagtagttaactac 20807643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 7999166 - 7999108
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||    
T  7999166 gatgttttggtttcttgag-ttatgacgcattaaaaattcatatttaatccatccgttgt 7999108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 47357259 - 47357172
Alignment:
Q  264 ccagttcaaaattcaatttctaagtcgatgttttg--gtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||| ||||||||||||||||| || |||| ||||  |||||||||| | ||| | ||||||||||||||||||||| ||| ||||||    
T  47357259 ccagctcaaaattcaatttctaggttgatggtttgatgtttcttgagttattggcgcattaaaaattcatatttaattcatccgttgt 47357172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 51935696 - 51935748
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccat 342  Q
    |||||||| |||||||||| | ||||| |||||||||||||||||||||||||    
T  51935696 gatgtttttgtttcttgagttattgacgcattaaaaattcatatttaatccat 51935748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 5865818 - 5865751
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgttggaaaat 357  Q
    ||||||||||||||||||| |||||   |||||||| |||||||||||||| ||| |||| |||||||    
T  5865818 gatgttttggtttcttgagtttttggtgcattaaaacttcatatttaatccgtaccttgtcggaaaat 5865751  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 48899181 - 48899240
Alignment:
Q  290 gatgttttggtttcttgaggttttgacacattaaaaattcatatttaatccatacgttgt 349  Q
    |||||||| |||||||||| | ||| | ||||||||||||||||||||||||| ||||||    
T  48899181 gatgttttagtttcttgagttattggcgcattaaaaattcatatttaatccatccgttgt 48899240  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 48899700 - 48899761
Alignment:
Q  192 agacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgta 253  Q
    ||||||||||| |||| ||||||||||| || ||  |||||||||||| |||||||||||||    
T  48899700 agacttatttggaatgttacgaaacttttcacatcatctatatgtatttttatagaggtgta 48899761  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 51936392 - 51936455
Alignment:
Q  189 tcgagacttatttgaaatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||||| |||| ||||||||||| || ||  |||||||||||| | ||||||||||    
T  51936392 tcgagacttatttggaatgttacgaaacttttcacatcatctatatgtattttcatagaggtgt 51936455  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 24204970 - 24205016
Alignment:
Q  118 ctgcacttaagttcgattcctgacagagcattaattgtgattttgcg 164  Q
    ||||||||||||||| || ||| |||||||| |||||||||||||||    
T  24204970 ctgcacttaagttcggtttctggcagagcatcaattgtgattttgcg 24205016  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 6131796 - 6131748
Alignment:
Q  204 aatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    |||||||||||||||| |||||  |||||||||||| | ||||||||||    
T  6131796 aatgctacgaaactttgcagatcctctatatgtattttaatagaggtgt 6131748  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 48899550 - 48899606
Alignment:
Q  192 agacttatttgaaatgctacgaaactttacagatattctatatgtattattatagag 248  Q
    ||||||||||| |||| ||||||||||| || ||  |||||||||||| ||||||||    
T  48899550 agacttatttggaatgttacgaaacttttcacatcatctatatgtatttttatagag 48899606  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 47478 - 47430
Alignment:
Q  204 aatgctacgaaactttacagatattctatatgtattattatagaggtgt 252  Q
    ||||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  47478 aatgctacgaaactttacagatcctctatatgcatttttatagaggtgt 47430  T

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