View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_48 (Length: 397)
Name: NF17833_high_48
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 9451572 - 9451942
Alignment:
| Q |
17 |
aaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcattt |
116 |
Q |
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| T |
9451572 |
aaaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcattt |
9451671 |
T |
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| Q |
117 |
atacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatattt |
216 |
Q |
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| T |
9451672 |
atacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatattt |
9451771 |
T |
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| Q |
217 |
ctacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatcctttt |
316 |
Q |
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| T |
9451772 |
ctacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatcctttt |
9451871 |
T |
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| Q |
317 |
tcttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttg |
387 |
Q |
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| T |
9451872 |
tcttgttaaatgggaaaggtctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttg |
9451942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 237 - 387
Target Start/End: Original strand, 9440567 - 9440716
Alignment:
| Q |
237 |
acaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatcctttttcttgttaaatgggaaaggt |
336 |
Q |
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| T |
9440567 |
acaagttgtgtcttgaacaaaa-gacataacaatcaagctatgtgtttcacttcctccttccctttgtcatcatcctttttcttgttaaatgggaaaggt |
9440665 |
T |
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| Q |
337 |
ctaaaccctttttgaagcaatttctcaacctcctcaaactgaaggcctttg |
387 |
Q |
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| T |
9440666 |
ctaaaccctttctgaagcaatttctcaacctcctcaaactgaagacctttg |
9440716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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