View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_5 (Length: 698)
Name: NF17833_high_5
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Original strand, 32557435 - 32558122
Alignment:
| Q |
1 |
ctcccatatttgttcccaacatttgattattataacagtcttctgatgcattctgctcccatgatgaataaaaataaccatgatcgcctccgttgaatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557435 |
ctcccatatttgttcccaacatttgattattataacaatcttctgatgcattctgctcccatgatgaataaaaataaccatgatcgcctccgttgaatac |
32557534 |
T |
|
| Q |
101 |
tgaatcacctggactataacaggcagagctagtaatatccggtggcaacggaggaagctcaacattgtcgttgttaaaataggaatttccattgttatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32557535 |
tgaatcacctggactataacaggcagagctagtaatatccggtggcaacggaggaagctcaacattgtcgttgttaaaataggaatttccattattatta |
32557634 |
T |
|
| Q |
201 |
atgttattaatactagcctccaatgtatcaagaggaacttgatgaggaagactgtatttattgaaataattattatcatttccctcaccgtaaccgtaac |
300 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557635 |
atgttattaataccagcctccaatgtatcaagaggaacttgatgaggaagactgtatttattgaaataattattatcatttccctcaccgtaaccgtaac |
32557734 |
T |
|
| Q |
301 |
tcccagaggaagttatgattgaaaccgggtcgatagacaaccccgggttttgttgaataggaaccggttcaggttgaagaacaaaagaaaggtcgtaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32557735 |
tcccagaggaagttatgattgaaaccgggtcgatagacaaccccgggttttgttgaataggaacgggttcaggttgaagaacaaaagaaaggtcgtaaaa |
32557834 |
T |
|
| Q |
401 |
actttgag---nnnnnnnnnnnnnnnnnnngtcgggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagca |
497 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557835 |
actttgaggttgttgttgttgttgttgttggtcaggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagca |
32557934 |
T |
|
| Q |
498 |
cgtgagccacgcatgccacgtgcggctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggat |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32557935 |
cgtgagccacgcatgccacgtgcggctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggat |
32558034 |
T |
|
| Q |
598 |
cgcgtatctctgctgcgtatcttccccatggtcttcttcgtactcctaggtatcttcctccccatgctgtttgttgctgctgttgttg |
685 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32558035 |
cgcgtatctctgctgcgtatcttccccatggtcttcttcgtactcctaggtatcttcctccccatgctgtttgttgctgctgctgttg |
32558122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 598
Target Start/End: Original strand, 6507659 - 6507735
Alignment:
| Q |
522 |
gctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatc |
598 |
Q |
| |
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||||| || ||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||| |||||| |
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| T |
6507659 |
gctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatc |
6507735 |
T |
|
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