View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_50 (Length: 396)
Name: NF17833_high_50
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 53346197 - 53346557
Alignment:
| Q |
16 |
atttccacaaaatattacccgtggttgtcaatattttcatgtgcttaattttctaagataactgttgccaacatctttagctctacatagcagaatgtgt |
115 |
Q |
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| T |
53346197 |
atttccacaaaatattacccgtggttgtcaatattttcatgtgcttaattttctaagataac----------atctttagctctacatagcagaatgtgt |
53346286 |
T |
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| Q |
116 |
gtgcgagttagcaacatcattatataacaatagaatgatttgaaagacattcaatcttccaacata---acgtggtaggaaaatccaataatcacctatt |
212 |
Q |
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| T |
53346287 |
gtgcgagttagcaacatcattatataacaatagaatgatttgaaagacattcaatcttccaacatactaacgtggtaggaaaatccaataatcacctatt |
53346386 |
T |
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| Q |
213 |
tggatggattactccagttggtagtgtagatgtaggacttgcgtggcattaatgtattgagttctgtgttacaattatgaagcaattacacgttgaataa |
312 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53346387 |
tggatggtttactccagttggtagtgtagatgtaggacttgcgtggcattaatgtattgagttctgtgttacaattatgaagcaattacacattgaataa |
53346486 |
T |
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| Q |
313 |
gtttacagaaaagttatgcaacattaatatgtctaaatatctaattatgagtcaccgttagtagcaattat |
383 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53346487 |
gtttgcagaacagttatgcaacattaatatgtctaaatatctaattatgagtcacagttagtagcaattat |
53346557 |
T |
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