View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_high_52 (Length: 391)

Name: NF17833_high_52
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_high_52
NF17833_high_52
[»] chr5 (5 HSPs)
chr5 (11-373)||(17854980-17855342)
chr5 (258-291)||(11257754-11257787)
chr5 (252-289)||(13996378-13996415)
chr5 (136-189)||(39994674-39994727)
chr5 (259-291)||(25019422-25019454)
[»] chr1 (1 HSPs)
chr1 (253-291)||(6025972-6026010)
[»] chr3 (3 HSPs)
chr3 (135-198)||(50402646-50402709)
chr3 (135-193)||(15802578-15802636)
chr3 (253-291)||(50251557-50251595)
[»] chr8 (1 HSPs)
chr8 (253-291)||(45371100-45371138)
[»] chr6 (2 HSPs)
chr6 (257-291)||(2732961-2732995)
chr6 (253-291)||(33735437-33735475)
[»] chr4 (1 HSPs)
chr4 (253-291)||(4762149-4762187)
[»] chr2 (1 HSPs)
chr2 (148-209)||(31246942-31247003)


Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 17854980 - 17855342
Alignment:
Q  11 cacagaacagtgtagtaaggaaatgctgattctataatatcctcttctcaatcttctctgtaaaattgtttcttctttgaaaaagttattttctgtttgt 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17854980 cacagaacagtggagtaaggaaatgctgattctataatatcctcttctcaatcttctctgtaaaattgtttcttctttgaaaaagttattttctgtttgt 17855079  T
Q  111 tattgtaatgatctgattctcatagaacaaatcaatattgttccacaatatgtgatatagtacaaagtgttatcaaatagcagttataacggtgttatac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17855080 tattgtaatgatctgattctcatagaacaaatcaatattgttccacaatatgtgatatagtacaaagtgttatcaaatagcagttataacggtgttatac 17855179  T
Q  211 cgctatagcgttgtggaatggaatgtagactaaccgctgcttttccgcgatatgctttttagtacaaaatgttgtcaaatatgttgctaaatgtggcact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17855180 cgctatagcgttgtggaatggaatgtagactaaccgctgcttttccgcgatatgctttttagtacaaaatgttgtcaaatatgttgctaaatgtggcact 17855279  T
Q  311 acagcacttttgaattgcggaattttaacaatccgcaattgataacattgatagtgacgctat 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17855280 acagcacttttgaattgcggaattttaacaatccgcaattgataacattgatagtgacgctat 17855342  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 11257754 - 11257787
Alignment:
Q  258 cgatatgctttttagtacaaaatgttgtcaaata 291  Q
    ||||||||| ||||||||||||||||||||||||    
T  11257754 cgatatgctatttagtacaaaatgttgtcaaata 11257787  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 13996415 - 13996378
Alignment:
Q  252 tttccgcgatatgctttttagtacaaaatgttgtcaaa 289  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  13996415 tttccgcgatacgctatttagtacaaaatgttgtcaaa 13996378  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 39994674 - 39994727
Alignment:
Q  136 aacaaatcaatattgttccacaatatgtgatatagtacaaagtgttatcaaata 189  Q
    |||||| || |||||||| ||||||||  ||||||||||||||||| |||||||    
T  39994674 aacaaaccactattgttcaacaatatgcaatatagtacaaagtgttgtcaaata 39994727  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 25019454 - 25019422
Alignment:
Q  259 gatatgctttttagtacaaaatgttgtcaaata 291  Q
    ||||||||||||||||||||||||| |||||||    
T  25019454 gatatgctttttagtacaaaatgttttcaaata 25019422  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 6026010 - 6025972
Alignment:
Q  253 ttccgcgatatgctttttagtacaaaatgttgtcaaata 291  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6026010 ttccgcgatatgctatttagtacaaaatgttgtcaaata 6025972  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 50402709 - 50402646
Alignment:
Q  135 gaacaaatcaatattgttccacaatatgtgatatagtacaaagtgttatcaaatagcagttata 198  Q
    |||||||||| ||||||||| |||||||  || ||||| |||||||| ||||||||||| ||||    
T  50402709 gaacaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatagcagctata 50402646  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 15802578 - 15802636
Alignment:
Q  135 gaacaaatcaatattgttccacaatatgtgatatagtacaaagtgttatcaaatagcag 193  Q
    |||||||||  |||| |||| | |||||| ||||||||||||||||| |||||||||||    
T  15802578 gaacaaatcgctattcttccgcgatatgttatatagtacaaagtgttgtcaaatagcag 15802636  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 50251595 - 50251557
Alignment:
Q  253 ttccgcgatatgctttttagtacaaaatgttgtcaaata 291  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  50251595 ttccgcgatatgctatttagtagaaaatgttgtcaaata 50251557  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 45371138 - 45371100
Alignment:
Q  253 ttccgcgatatgctttttagtacaaaatgttgtcaaata 291  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  45371138 ttccgcaatatgctatttagtacaaaatgttgtcaaata 45371100  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 2732961 - 2732995
Alignment:
Q  257 gcgatatgctttttagtacaaaatgttgtcaaata 291  Q
    |||||||||| ||||||||||||||||||||||||    
T  2732961 gcgatatgctatttagtacaaaatgttgtcaaata 2732995  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 33735475 - 33735437
Alignment:
Q  253 ttccgcgatatgctttttagtacaaaatgttgtcaaata 291  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  33735475 ttccgtgatatgctatttagtacaaaatgttgtcaaata 33735437  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 4762149 - 4762187
Alignment:
Q  253 ttccgcgatatgctttttagtacaaaatgttgtcaaata 291  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  4762149 ttccgcaatatgctttttagttcaaaatgttgtcaaata 4762187  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 31247003 - 31246942
Alignment:
Q  148 ttgttccacaatatgtgatatagtacaaagtgttatcaaatagcagttataacggtgttata 209  Q
    |||||||| ||||||  || |||| |||| |||| |||||||||||||||||| ||||||||    
T  31247003 ttgttccaaaatatgcaatttagttcaaaatgttgtcaaatagcagttataaccgtgttata 31246942  T

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