View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_54 (Length: 386)
Name: NF17833_high_54
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 41288882 - 41288518
Alignment:
| Q |
13 |
caagatgacatggtcctacaattttaggagcggttttaatctatgtagaaaatacacttctgctgattgatggtgcgtcagatgtctagcattggtcaaa |
112 |
Q |
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| T |
41288882 |
caagttgacatggtcctacaattttaggagcggttttaatctatgtagaaaatacacttctgctgattgatggtgcgtcagatgtctagcattggtcaaa |
41288783 |
T |
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| Q |
113 |
tgtccaacatcaactcatggttacct---------tcattttcttttcttaaattattaccggtgtccgtgtgacagcttcatatagacatgaaacaaaa |
203 |
Q |
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| T |
41288782 |
tgtccaacatcaacgcatagttacttcaattactttcattttcttttcttaaattattaccggtgtccgtgtgacagcttcatgtagacatgaaacaaaa |
41288683 |
T |
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| Q |
204 |
catactctctactataagtacttagaatgcaatgtaggtgatggaagatttacctgtttgagtcaagtaaaacggcaaccaataaagaaaagtataagca |
303 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41288682 |
catactctctactataggtacttagaatgcaatgtaggtgatggaagatt-acctgtttgagtcaagtaaaacggcaaccaataaagaaaagtataagca |
41288584 |
T |
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| Q |
304 |
acaagcttagcaaagaaaagacacaaagcaaaagtaataacccctggtatcatacaagcttcaagt |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41288583 |
acaagcttagcaaagaaaagacacaaagcaaaagtaataacccctggtatcatacaagcttcaagt |
41288518 |
T |
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