View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_56 (Length: 384)
Name: NF17833_high_56
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 51916367 - 51916726
Alignment:
| Q |
11 |
cataggttgttgtcttccctattccaaggaaaacgaaagaaatcaaatcatacaaagacaatgtgctaaggatccaaatcattgtatcttattagatttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51916367 |
cataggttgttgtcttccctattccaaggaaaacgaaagaaatcaaatcatacaaagacaatgtgctaaggatccaaatcattgtatcttattagatttg |
51916466 |
T |
|
| Q |
111 |
agccttcacatatcaatgctttgctttcaacaaaaatatatcaataatactcggtgggaattgaatgaattgtcttttaatatttgatcttacccgatca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51916467 |
agccttcacatatcaatgctttgctttcaacaaaaatatatcaataatactcggtgggaattgaatgaattgtcttttaatatttgatcttacccgatca |
51916566 |
T |
|
| Q |
211 |
agattgataataataacttgaacaa---ccatcgggatggatgttggagggtgnnnnnnngcaaagtactatgatgttcaagtcagttaaaaagcaagag |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51916567 |
agattgataataataacttgaacaacgtccatcgggatggatgtcggagggtg-ttttttgcaaagtactatgatgttcaagtgagttaaaaagcaagag |
51916665 |
T |
|
| Q |
308 |
aggaagatatattaggtaaaaagattgaatatcttgcattgttttgaaggagggtttttat |
368 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51916666 |
agaaagatatattaggtaaaaagattgaatatcttgcattgttttgaaggagggtttttat |
51916726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University