View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_57 (Length: 383)
Name: NF17833_high_57
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 48295240 - 48295605
Alignment:
| Q |
1 |
gaaacataataattttcatggttacatgacagagccatacattacatacaactttccacttagtcatgttattcatgtatagttttataaagaggggaag |
100 |
Q |
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| T |
48295240 |
gaaacataataattttcatggttacatgacagagccatacattacatacaactttcctcttagtcatgttattcatgtatagttttataaagaggggaag |
48295339 |
T |
|
| Q |
101 |
aaaacttggaaggtgttgcataaaccgaacaatgagtccatgaaattttcttcttgaatgaaacatatctttgttgaggacatgctttgttacaaaattt |
200 |
Q |
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| T |
48295340 |
aaaacttggaaggtgttgtataaaccgaacaatgagtccatgaaattttcttcttgaatgaaacatatctttgttgaggacatgctttgttacaaatttc |
48295439 |
T |
|
| Q |
201 |
ttccaagttatgcaatgcacaaccacattttttgtggtatggccttcgctcaacctctttgtcatgtgatgaaatgcttccttcaaagacacacctaagc |
300 |
Q |
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| T |
48295440 |
ttccaagttatgcaatggacaaccacattttttgtggtatggccttcgctcaacctctttgtcatgtgatgatatgcttccttcaaagacacacctaagc |
48295539 |
T |
|
| Q |
301 |
atcatatgagatgctccagtagccatgttcttctatacttaattgtgtttgtaagttggtgattct |
366 |
Q |
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| T |
48295540 |
atcatatgagatgctccagtggccatgttcttctatacttaattgtgtttgtaagttggtgattct |
48295605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 65 - 366
Target Start/End: Original strand, 48306177 - 48306478
Alignment:
| Q |
65 |
catgttattcatgtatagttttataaagaggggaagaaaacttggaaggtgttgcataaaccgaacaatgagtccatgaaattttcttcttgaatgaaac |
164 |
Q |
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| T |
48306177 |
catgttattaatttatagttttataaagaggggaagaaaacttggaaggtattgtataaaccgaacaatgagtccatgaaattttcttcttgaatgaaac |
48306276 |
T |
|
| Q |
165 |
atatctttgttgaggacatgctttgttacaaaatttttccaagttatgcaatgcacaaccacattttttgtggtatggccttcgctcaacctctttgtca |
264 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48306277 |
atatctttgttgaggacatgctttgttacaaatttcttccaagttatgcaatggacaaccacattttttgtggtatggccttcgctcaacctctttgtca |
48306376 |
T |
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| Q |
265 |
tgtgatgaaatgcttccttcaaagacacacctaagcatcatatgagatgctccagtagccatgttcttctatacttaattgtgtttgtaagttggtgatt |
364 |
Q |
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| T |
48306377 |
tgtgatgatatgcttccttcaaagacacacctaagcatcatatgagatgctccagtggccatgttcttctatacttaattgtgtttgtaagttggtgatt |
48306476 |
T |
|
| Q |
365 |
ct |
366 |
Q |
| |
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|| |
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| T |
48306477 |
ct |
48306478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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