View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_58 (Length: 383)
Name: NF17833_high_58
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_58 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 30667486 - 30667120
Alignment:
| Q |
1 |
aaattagaacattacaccaattccatgaccactttaccctaccttagaccatgatatatatcccctgcgcactcactacatacatctcctcacatgtatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30667486 |
aaattagaacattacaccaattccatgacaactttaccctaccttagaccatgatatatatcccctgcgcactcactacatacatctcctcacatgtatt |
30667387 |
T |
|
| Q |
101 |
gttacaactaattcgctaccatgaagatttggccttctttttaacttattcgtccactagtcgtattacagaaccttgaagcaagg-tataagatttcag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
30667386 |
gttacaactaattcgctaccatgaagatttggccttctttttaacttattcgtccactagtcgtattacagaaccttgaagcaaggctataatatttcag |
30667287 |
T |
|
| Q |
200 |
agaatctaaacatagaattcagaattgaaatctcagagaatgataagtcactcgaagaagttacagcaatgtgtcgtcgatgtgcccatgtcagtttcca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30667286 |
agaatctaaacatagaattcagaattgaattctcagagaatgataagtcactcgaagaagttacagcaatgtgtcgtcgacgtgcccatgtcagtttcca |
30667187 |
T |
|
| Q |
300 |
tgcttcataggtaaaaatcgaagagtacaactatgaaacatatacaatatacatataagtctattgt |
366 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30667186 |
tgtttcatagataaaaatcgaagagtacaactatgaaacatatacaatatacatataagtcttttgt |
30667120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University