View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_59 (Length: 372)
Name: NF17833_high_59
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_59 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 32268285 - 32268629
Alignment:
| Q |
15 |
agcataggcattgggtattagaatgttggaccgtccaaatacgagtgtcacattattttgtttcatcgttcataacaatgaaaacaatattaataattca |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268285 |
agcattggcattgggtattagaatgttggaccgtccaaatacgagtgtcacattattttgtttcatcgttcataacaatgaaaacaatattaataattca |
32268384 |
T |
|
| Q |
115 |
ggtgatgttaaatttaaaattgatgatggtgaagaagaagatgaaacattagagaatatgttggatgagagtttgatagatgagtttaagggtaagaaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268385 |
ggtgatgttaaatttaaaattgatgatggtgaagaagaagatgaaacattagagaatatgttggatgagagtttgatagatgagtttaagggtaagaaat |
32268484 |
T |
|
| Q |
215 |
taaatattgataatgttgtttgtcatgaaattgtggtggagggctatacacagttgttagaagcacttcgaggtttaggtaatgaaaactatgatcttgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268485 |
taaatattgataatgttgtttgtcatgaaattgtggtggagggctatacacagttgttagaagcacttcgaggtttaggtaatgaaaactatgatcttgt |
32268584 |
T |
|
| Q |
315 |
gatggtgggtaagaggcataatattggagatttgactgatgaaga |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268585 |
gatggtgggtaagaggcataatattggagatttgactgatgaaga |
32268629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 32262209 - 32262266
Alignment:
| Q |
302 |
actatgatcttgtgatggtgggtaagaggcataatattggagatttgactgatgaaga |
359 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||| ||||| |||||| |||||||| |
|
|
| T |
32262209 |
actatgaccttgtgatggtagggaagaggcataatgttggaaatttgaaagatgaaga |
32262266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University