View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_60 (Length: 371)
Name: NF17833_high_60
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 32 - 358
Target Start/End: Complemental strand, 2928493 - 2928167
Alignment:
| Q |
32 |
tatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttcttttctgaac |
131 |
Q |
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| T |
2928493 |
tatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttcttttctaaac |
2928394 |
T |
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| Q |
132 |
cattcattttcatttcattgacagagcttttaaggaagatacttcagaaactaaataaatattttaagaatttatgagcaatgactctgtttatgctact |
231 |
Q |
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| T |
2928393 |
cattcattttcatttcattgatagagcttttaaggaagatacttcagaaactaaataaatattttaagaatttatgagcaatgactctgtttatgctact |
2928294 |
T |
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| Q |
232 |
tattcttccttatagataggttcatgatcagtagccttaagttttctattgatgcatctatatcacctttgtaacattctattacgactatctaacaatg |
331 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2928293 |
tattcttccttatagataggttcatgatcagtggccttaagttttctattgatgcatctatatcacctttgtaacattctattacgactatctaacagtg |
2928194 |
T |
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| Q |
332 |
atctggtatggcttttttctgtgctgc |
358 |
Q |
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| T |
2928193 |
atctggtatggcttttttctgtgctgc |
2928167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 2310570 - 2310703
Alignment:
| Q |
24 |
gcttcagatatttgtcaccattgattatgaaaaaagtgtgttaccacttgtcaatagactacctttcaaccggcggtatgattaattcattatctttctt |
123 |
Q |
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| T |
2310570 |
gcttgagatatttgtcaccattgattttgaaaaaagattgtcaccacttatcgatcgactacctttcaatcgtcggtatgactaattcattatctttctt |
2310669 |
T |
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| Q |
124 |
ttctgaaccattcattttcatttcattgacagag |
157 |
Q |
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| T |
2310670 |
ttctaaaccattcattttcatttcattgatagag |
2310703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 2310927 - 2310985
Alignment:
| Q |
188 |
aaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatag |
246 |
Q |
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||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
2310927 |
aaatattttaagaatttatgagcaatggctctgtttatgttaattattcttccttatag |
2310985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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