View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_68 (Length: 342)
Name: NF17833_high_68
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 18326811 - 18326586
Alignment:
| Q |
1 |
tgatgtaatatgttttgtactgctagatcattttcattctccatcatacatgttcacatcagttttgaatttttaagtaatgtgtaattaggtgtatgca |
100 |
Q |
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| T |
18326811 |
tgatgtaatatgttttgtactgctagatcattttcattctccatcatacatgttcacatcagttttgaatttttaagtaatgtgtaattaggtgtatgca |
18326712 |
T |
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| Q |
101 |
aaagcaaaagaatgttcggaaatactttctgtggaggactttgccattttacttgccaaacatttcacatcattttacagccaggttggtgactgaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18326711 |
aaagcaaaagaatgttcggaaatactttctgtggaggactttgccattttacttgccaaacatttcacatcattttacagccaggttggtgactggaatt |
18326612 |
T |
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| Q |
201 |
caattccctattaaagagactattca |
226 |
Q |
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| T |
18326611 |
caattccctattaaagagactattca |
18326586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 18326529 - 18326495
Alignment:
| Q |
283 |
ctacaatcattactttagtagaacaaaatgaaaat |
317 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
18326529 |
ctacaatcattaccttagtagaacaaaatgaaaat |
18326495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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