View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_70 (Length: 335)
Name: NF17833_high_70
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_70 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 7895300 - 7895643
Alignment:
| Q |
1 |
acattttaccaagcatgttttcatgtcagtctttaacacatctta-gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7895300 |
acattttaccaagcatgttttcatgtcagtctttaacacatcttaagctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttca |
7895399 |
T |
|
| Q |
100 |
atttgccgacatatattaactagtttgcaactacaaaattttggattttgcgttggt-------------ccgagccattttcaacttttaacaagttga |
186 |
Q |
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| T |
7895400 |
atttgccgacatatattaactagtttgcaactacaaaattttggattttgcgttggtgataattatcgtgccgagccattttcaacttttaacaagttga |
7895499 |
T |
|
| Q |
187 |
atagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtgtgacgcttgttaattttactatgtataatcgttttcatag |
286 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7895500 |
atagtttgctccttaccaattgtaccttgaatcgtgtaggaactctttgcatatcaagtgtgacccttgttaattttactatgtataatcgttttcatag |
7895599 |
T |
|
| Q |
287 |
attttacaagtaattccacatcaaaaggagcctcctttgcttct |
330 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7895600 |
attttacaagtaattccacatcaaaaggagcctcctttgtttct |
7895643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 7976572 - 7976298
Alignment:
| Q |
15 |
atgttttcatgtcagtctttaacacatctta-gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatat |
113 |
Q |
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| T |
7976572 |
atgttttcatgtcatactttaacacatcttaagctttctactt-accctaatggaggtcatgaaacattgtttccaaaatctttcaatttgccggc---- |
7976478 |
T |
|
| Q |
114 |
attaactagtttgcaactacaaaattttggattttgcgttggt-------------ccgagccattttcaacttttaacaagttgaatagtttgctcctt |
200 |
Q |
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| T |
7976477 |
actaactagcttgcaactagagagttttggattttgccttggtgataatgatcgtgctgagcctttttcgacatttaacaagttgaatagtttgatcatt |
7976378 |
T |
|
| Q |
201 |
accaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtgtgacgcttgttaattttactatgtataatcgttt |
280 |
Q |
| |
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||||||| |||||||| | |||||||||||||| |||||||||||| |||||| | || || |||||||||| |||||| |
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| T |
7976377 |
accaattctaccttgagtggtgcaggaaccctttgcatatcaagtgctacgcttatgaacttaactatgtatactcgttt |
7976298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 45870307 - 45870213
Alignment:
| Q |
12 |
agcatgttttcatgtcagtctttaacacatctta-gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgcc |
106 |
Q |
| |
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|||||||||||||||||| || |||||||||||| ||||| || | |||||||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
45870307 |
agcatgttttcatgtcagactctaacacatcttaagctttcta-tctaccctaatgatcgtcatgaaacactgtttccaaaatctatcgatttgcc |
45870213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 2996227 - 2996110
Alignment:
| Q |
34 |
taacacatctta-gctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaatttgccgacatatattaactagtttgcaacta |
132 |
Q |
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|||||||||||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||| || | ||| ||||| ||| ||||| |
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| T |
2996227 |
taacacatcttaagctttgta-tttacaataaaggaggtcatgaaacaatgtttccaaaatctttcaatttatcggc----attgactagcttgtaacta |
2996133 |
T |
|
| Q |
133 |
caaaattttggattttgcgttgg |
155 |
Q |
| |
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|||||||||| |||||| ||||| |
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| T |
2996132 |
caaaattttgaattttgtgttgg |
2996110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 2996095 - 2996044
Alignment:
| Q |
157 |
ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattg |
208 |
Q |
| |
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||||||||||||| |||||||||| |||||||| ||||||| || ||||||| |
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|
| T |
2996095 |
ccgagccattttcgacttttaacaggttgaataatttgctcatttccaattg |
2996044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 45856484 - 45856400
Alignment:
| Q |
162 |
ccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtg |
246 |
Q |
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| T |
45856484 |
ccattttcaacctttaaacggttgaatagtttggtcctttacaattgtgctttgaaggatgcagtaaccctttgcatatcaagtg |
45856400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 44501059 - 44500999
Alignment:
| Q |
157 |
ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaa |
217 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||| ||||| | |||||||| |||| |
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| T |
44501059 |
ccgagccattttcaacctttaacagattgaatagtttggtccttcacgattgtaccgtgaa |
44500999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 3978480 - 3978516
Alignment:
| Q |
71 |
tcatgaaacactgtttccaaaatctttcaatttgccg |
107 |
Q |
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| T |
3978480 |
tcatgaaacaccgtttccaaaatctctcaatttgccg |
3978516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 3978575 - 3978615
Alignment:
| Q |
157 |
ccgagccattttcaacttttaacaagttgaatagtttgctc |
197 |
Q |
| |
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| T |
3978575 |
ccgagccattttcgatttttaacaggttgaatagtttgctc |
3978615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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