View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_72 (Length: 328)
Name: NF17833_high_72
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_72 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 47667029 - 47666714
Alignment:
| Q |
1 |
acaattatacaattgttttttggacgtttacaattatacaatttttgtttggcttaaacaagtaaaaacaaaaggttttgtctttttgatggaacaaaag |
100 |
Q |
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| T |
47667029 |
acaattatacaattgttttttggacgtttacaattatacaatttttgtttggcttaaacaagtaaaaacaaaaggttttgtctttttgatggaacaaaag |
47666930 |
T |
|
| Q |
101 |
gattatgaaataaacacaaaatgtttgatcactaaccccaacatannnnnnncttcattagtgatcaaactccttatcatgtg--nnnnnnnnaaggacc |
198 |
Q |
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| T |
47666929 |
gattatgaaataaacacaaaatgtttgatcactaaccccaacatatttttttcttcattagtgatcaaactccttatcatgtgtttttttttagaggacc |
47666830 |
T |
|
| Q |
199 |
ttatcatgtccttacccgattatttcatcacattattagtcaatatgtttttatctgatgcctttgaagtagtttaaatattatacgcttctttaaaaaa |
298 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47666829 |
ttatcatgtccttacccaattatttcatcacattattagtcaatatgtttttatctgatgcctttgaagtaatttaaatattatacgcttctttaaaaaa |
47666730 |
T |
|
| Q |
299 |
tattaaacattatatg |
314 |
Q |
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|||||||||||||||| |
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| T |
47666729 |
tattaaacattatatg |
47666714 |
T |
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