View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_73 (Length: 327)
Name: NF17833_high_73
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_73 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 4055835 - 4055966
Alignment:
| Q |
29 |
atttatagcttagttctacttcttatacactatatccaatatataagagcttcttgtaatactccgcaacatgacttctttctcataagagatttttgat |
128 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4055835 |
atttatagcctagttatacttcttatacactatatccaatatctaagagcttcttgtaatactccgcaacatgacttctttctcataagagatttttgat |
4055934 |
T |
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| Q |
129 |
gagtcatcattgctactcacttcgtctttctg |
160 |
Q |
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| T |
4055935 |
gagtcatcattgctactcacttcgtctttctg |
4055966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 4056035 - 4056116
Alignment:
| Q |
229 |
caaggacaacactatatttttgcacagggaaacaatttgaagagaatatatcagaactgaaatcatatttcgttttcattta |
310 |
Q |
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| T |
4056035 |
caaggacaacactatatttttgcacagggaaacaatttgaagagaatatatcagaactgaaatcatatttcgttttcattta |
4056116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 25067972 - 25067841
Alignment:
| Q |
29 |
atttatagcttagttctacttcttatacactatatccaatatataagagcttcttgtaatactccgcaacatgacttctttctcataagagatttttgat |
128 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067972 |
atttatagcctagttatacttcttatacactatatccaatatctaagagcttcttgtaatactccgcaacatgacttctttctcataagagatttttgat |
25067873 |
T |
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| Q |
129 |
gagtcatcattgctactcacttcgtctttctg |
160 |
Q |
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| T |
25067872 |
gagtcatcattgctactcacttcgtctttctg |
25067841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 25067772 - 25067691
Alignment:
| Q |
229 |
caaggacaacactatatttttgcacagggaaacaatttgaagagaatatatcagaactgaaatcatatttcgttttcattta |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067772 |
caaggacaacactatatttttgcacagggaaacaatttgaagagaatatatcagaactgaaatcatatttcgttttcattta |
25067691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 794273 - 794432
Alignment:
| Q |
1 |
agcaaatgtgatcttnnnnnnncgaaagatttatagcttagttctacttcttatacactatatccaatatataagagcttcttgtaatactccgcaacat |
100 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
794273 |
agcaaatgtgatcttaaaaaaacgaaagatttatagcctagttctacttcttatacactacatccaatatctaagagcttcttgtaatactccgcaacat |
794372 |
T |
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| Q |
101 |
gacttctttctcataagagatttttgatgagtcatcattgctactcacttcgtctttctg |
160 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
794373 |
gacttctttcttataagagatttttgatgagtcatcattactactcacttcgtctttctg |
794432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 794501 - 794582
Alignment:
| Q |
229 |
caaggacaacactatatttttgcacagggaaacaatttgaagagaatatatcagaactgaaatcatatttcgttttcattta |
310 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
794501 |
caaggacaacactatatttttgcacaaggaaacaattggaagagaatatatcagaactgaaatcatatttcgttttcattta |
794582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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