View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_74 (Length: 325)
Name: NF17833_high_74
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_74 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 1434958 - 1435260
Alignment:
| Q |
9 |
gatgaagatgatgaacaaattgatcctgatgatccttttgatattgctcaaacgaagaatgcttctcatgaaactcttcgccgttggagagtaatttcct |
108 |
Q |
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| T |
1434958 |
gatgaagatgatgaacaaattgatcctgatgatccttttgatattgctcaaacgaagaatgcttctcatgaaactcttcgccgttggagagtaatttcct |
1435057 |
T |
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| Q |
109 |
tttcttattctcatttctagtattattgttaattattgtgaattttgattattaatcgtcttatgttttgatgcattcatcgatttcttgctttttctgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1435058 |
tttcttattctcatttctagtattattgttaattattgtgaattttgattattaatcgtcttatgttttgatgcattcatcgatttcttgctttttctgt |
1435157 |
T |
|
| Q |
209 |
aactgcattttaatgtataaaatcaatttctatttctgtttctatctaattaatttaattaggattattcatcgcattttttggcttaaattttgatgaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1435158 |
aactgcattttaatgtataaaatcaatttctatttctgtttctatctaattaatttaattaggattattcatcgcattttttggcttaaattttgatgaa |
1435257 |
T |
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| Q |
309 |
tct |
311 |
Q |
| |
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||| |
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| T |
1435258 |
tct |
1435260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 12317320 - 12317201
Alignment:
| Q |
9 |
gatgaagatgatgaacaaattgatcctgatgatccttttgatattgctcaaacgaagaatgcttctcatgaaactcttcgccgttggagagtaatttcct |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12317320 |
gatgaagatgatgaacaaattgatcctgatgatccttttcatattgctcaaacgaagaatgcttctcatgaaactctacgccgttggagagtaatttcct |
12317221 |
T |
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| Q |
109 |
tttcttattctcatttctag |
128 |
Q |
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|||||||||||||||||||| |
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| T |
12317220 |
tttcttattctcatttctag |
12317201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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