View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_high_8 (Length: 645)
Name: NF17833_high_8
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_8 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 5689798 - 5690271
Alignment:
| Q |
1 |
aacaaaattaactaattggtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgct |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
5689798 |
aacaaaattaactaatttgtaaaaccagcaatgacagcatgaggctcaagagctttagcagcaggagaagcttcaacagcaggagaaggctcaacatgtt |
5689897 |
T |
|
| Q |
101 |
taccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgaccctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5689898 |
taccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgaccctt |
5689997 |
T |
|
| Q |
201 |
aacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
5689998 |
aacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatcacca |
5690097 |
T |
|
| Q |
301 |
aaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5690098 |
aaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgta |
5690197 |
T |
|
| Q |
401 |
gatctcctgtgtataactgcataatacaagattaatattaatttaattagtaacattttcacatgcatcaccaa |
474 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
5690198 |
gatctcctgtgtataactgcataattcaagattaatattaatttaattagtaacatttgcacaatcatcaccaa |
5690271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 476 - 626
Target Start/End: Original strand, 5690492 - 5690643
Alignment:
| Q |
476 |
aattaaaccgacaataaa-ctaccaataattttgatcacaaaaataaaatatagaagagaattaatagaaagaaatttactttgttgctaaaggggacca |
574 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5690492 |
aattaaaccgataataaaactatcaataattttgatcacaaagataaaatatagaggagaattaataaaaagaaatttactttgttgctaaaggggacca |
5690591 |
T |
|
| Q |
575 |
aatcaccaagagaattgacacttttattgcttaatctcaagtaagctgggct |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690592 |
aatcaccaagagaattgacacttttattgcttaatctcaagtaagctgggct |
5690643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 5 - 426
Target Start/End: Original strand, 25914486 - 25914904
Alignment:
| Q |
5 |
aaattaactaattggtaaaaccagcaatgacagcatgaggctcaagagccttagcagcaggagaagcttcaacagcagtagaaggctcaacatgcttacc |
104 |
Q |
| |
|
||||| |||| || ||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| || ||||||||| | ||||| |
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|
| T |
25914486 |
aaattcactagttagtaaaaccagcaatggtagcatgtggctcaagagctttagcagcaggagaagcttcaacattagggttaggctcaactggtttacc |
25914585 |
T |
|
| Q |
105 |
aagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||||| || ||||| |
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|
| T |
25914586 |
aagaagctcttgtggcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaaca |
25914685 |
T |
|
| Q |
205 |
ccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaat |
304 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||| |||||||| |||||||| || |||||||| || |||| |||||||| ||||||| | |
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|
| T |
25914686 |
ccttcaaaaattccagtaccaccagtcacagttagatatgtgtcctc---ataggttaggtaaggtccttgcacagctatttgaccatagtctccaacgt |
25914782 |
T |
|
| Q |
305 |
ggaaactgtagattgcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgtagatc |
404 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| | |||||| |||||||||| || || ||||||||||||| |||||||||||| ||||||||||| || |
|
|
| T |
25914783 |
gaaaactgtagattgcttcatatctgtcaccatacttttctgctttgtgttgaatcaatatgcaaataccagctgttattccaatgcgtttttgtaggtc |
25914882 |
T |
|
| Q |
405 |
tcctgtgtataactgcataata |
426 |
Q |
| |
|
|| || || |||||||||||| |
|
|
| T |
25914883 |
accagtatacaactgcataata |
25914904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 626
Target Start/End: Original strand, 25914985 - 25915069
Alignment:
| Q |
542 |
gaaagaaatttactttgttgctaaaggggaccaaatcaccaagagaattgacacttttattgcttaatctcaagtaagctgggct |
626 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |
|
|
| T |
25914985 |
gaaagaaatttactttgttgctgaatgggactaaatcaccaagagaattgacacttttaaaccctaatctcaaataagcagggct |
25915069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 476 - 626
Target Start/End: Original strand, 26248584 - 26248729
Alignment:
| Q |
476 |
aattaaaccgacaataaactaccaataattttgatcacaaaaataaaatatagaagagaattaatagaaagaaatttactttgttgctaaaggggaccaa |
575 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||| || |
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|
| T |
26248584 |
aattaaaccgataaaaaactaccaataattttgatcacaaaaatataa-----aagagaattaatagaaagaaatttactttgttgctgaaggagactaa |
26248678 |
T |
|
| Q |
576 |
atcaccaagagaattgacacttttattgcttaatctcaagtaagctgggct |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
26248679 |
gtcaccaagagaattgacacttttattgcttaacctcgagtaagcagggct |
26248729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 87 - 352
Target Start/End: Complemental strand, 6792803 - 6792538
Alignment:
| Q |
87 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
186 |
Q |
| |
|
|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
|
|
| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
|
| Q |
187 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
286 |
Q |
| |
|
|| |||||||| | |||||||||||||||||||| |||||||||||||| | |||||| ||||| ||| |||||||| | ||||| || | | | |
|
|
| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatat |
6792604 |
T |
|
| Q |
287 |
gaccataatctccaaaatggaaactgtagattgcttcatatctatcacctttcttttcagctttgt |
352 |
Q |
| |
|
||||||| |||||||||| ||||| || |||||||||||| | || ||||| || || ||||||| |
|
|
| T |
6792603 |
gaccatactctccaaaataaaaactatatattgcttcatatatgtccccttttttctctgctttgt |
6792538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 115 - 386
Target Start/End: Complemental strand, 6800246 - 6799978
Alignment:
| Q |
115 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
214 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
|
|
| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
|
| Q |
215 |
ttccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaatggaaactgta |
314 |
Q |
| |
|
|||||| |||||||| ||| | | ||||| ||||| ||| |||||||| | ||||| || | |||||||| |||||||||| |||||||| |
|
|
| T |
6800146 |
ttccagttccaccagttacaaccaagtaagtatcctc---ataagttaaataagaaccttgtacataaatatgaccatagtctccaaaataaaaactgta |
6800050 |
T |
|
| Q |
315 |
gattgcttcatatctatcacctttcttttcagctttgtgttcgattaaaatgcaaataccagttgttattcc |
386 |
Q |
| |
|
|||||||||||| | || ||||| || || ||||||| || ||||||| || || |||| ||||||||| |
|
|
| T |
6800049 |
tattgcttcatatatgtccccttttttctctgctttgttttgaattaaaacacatattccagctgttattcc |
6799978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 22227490 - 22227359
Alignment:
| Q |
201 |
aacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctcca |
300 |
Q |
| |
|
|||||||||||| |||||||||||||| || | ||| ||||| ||||| | | || || | ||| |||||||| |||| || |||||||| |||||| |
|
|
| T |
22227490 |
aacaccttcaaagattccagaaccacctgttatagcaagatatgtgtctt---ggtatgtgagataaggtccttgtactgatatatgaccatagtctcca |
22227394 |
T |
|
| Q |
301 |
aaatggaaactgtagattgcttcatatctatcacc |
335 |
Q |
| |
|
|| | ||| ||||| |||||||||||||||||||| |
|
|
| T |
22227393 |
aagtagaagctgtaaattgcttcatatctatcacc |
22227359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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