View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_high_97 (Length: 267)
Name: NF17833_high_97
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_high_97 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 39188654 - 39188398
Alignment:
| Q |
10 |
aagaaaatatgtagcattggttagcagggttaaacgttacactcttctatgaataattttcaaattcctaacgtgtttttagaacattgttt--caagga |
107 |
Q |
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| T |
39188654 |
aagaaaatatgtagcattggttagcagggttaaacgttacactcttctatgaataattttcaaattcctcacgtgtttttagaacattgtttagcaagga |
39188555 |
T |
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| Q |
108 |
tttaaataagaatgatgtcnnnnnnnnnnnnnnnnnnnnncctcttcttcccttttctgacttccgtctctcaacaacannnnnnnggtttgataccatt |
207 |
Q |
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| T |
39188554 |
tttaaataagaatgatgtcttttatttttatttattttttcctcttcttcccttttctgacttccgtctctcaacaacatttttttggtttgataccatt |
39188455 |
T |
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| Q |
208 |
gccgctttctgctgcatttataccaaggagatctcggacatgaacaataaagagaag |
264 |
Q |
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| T |
39188454 |
gccgctttctgctgcatttataccaaggagatctcggacatgaacaataaagagaag |
39188398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 3494660 - 3494626
Alignment:
| Q |
18 |
atgtagcattggttagcagggttaaacgttacact |
52 |
Q |
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| T |
3494660 |
atgtagcattggttagcagggttaaatgttacact |
3494626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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