View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_low_1 (Length: 922)
Name: NF17833_low_1
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 877; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 8 - 912
Target Start/End: Complemental strand, 44849485 - 44848582
Alignment:
| Q |
8 |
ccaagaatatcttccaagctggaatagtagttgtccaatgtttccatgaactcacaaggttattctttctatgtttattataatcacatgcttgattatt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44849485 |
ccaaaaatatcttccaagctggaatagtagttgtccaatgtttccatgaactcacaaggttattcattctatgtttattataatcacatgcttgattatt |
44849386 |
T |
|
| Q |
108 |
atagaactgaacccaaacaaagtcaaaaagtcctgtttcaagggctcttcctaagaatctatcaggaaatggacattgaggagcagcacttagataaacc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849385 |
atagaactgaacccaaacaaagtcaaaaagtcctgtttcaagggctcttcctaagaatctatcaggaaatggacattgaggagcagcacttagataaacc |
44849286 |
T |
|
| Q |
208 |
ccgttataatccttgagaaatcgtgcaaggtgttgccaattttttgtggaaccaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849285 |
ccgttataatccttgagaaatcgtgcaaggtgttgccaattttttgtggaaccaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatg |
44849186 |
T |
|
| Q |
308 |
gtcttgaatatgacgtgccacccaagaaagtgttccataaatatcttgagaagcttctagcatcctcaattgaagacaaagagtatcttccgagtccacc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849185 |
gtcttgaatatgacgtgccacccaagaaagtgttccataaatatcttgagaagcttctagcatcctcaattgaagacaaagagtatcttccgagtccacc |
44849086 |
T |
|
| Q |
408 |
gccgatagaaagaaacattgtgatacctctgctctggcaatacttgatgccgtgacttaatttggtgcatgaattagttgaagggttgcagtgacctgct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849085 |
gccgatagaaagaaacattgtgatacctctgctctggcaatacttgatgctgtgacttaatttggtgcatgaattagttgaagggttgcagtgacctgct |
44848986 |
T |
|
| Q |
508 |
aagttcaacgtaggggttcgaccattgccgaatctggagaggaaggcaatgtttatgtgggtgtatctcccagtggcacatgtttcatacagtgagcctt |
607 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848985 |
aagttcaacgtaggggttcgacctttgccgaatctggagaggaaggcaatgtttatgtgggtgtatctcccagtggcacatgtttcatacagtgagcctt |
44848886 |
T |
|
| Q |
608 |
cttcaccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaaaagaaaaagtgacaaggtatgagaattctttgc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848885 |
cttcaccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaaaagaaaaagtgacaaggtatgagaattctttgc |
44848786 |
T |
|
| Q |
708 |
catctttgtgaatgtctggggttgttgtgacttgtgaatgattactctttgcacttgtgatatttatactgtgaatgggttgtattcacaccttgacgta |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848785 |
catctttgtgaatgtctggggttgttgtgacttgtgaatgattactctttgcacttgtgatatttatactgtgaatgggttgtattcacaccttgacgta |
44848686 |
T |
|
| Q |
808 |
atctaataatattttacactagcttccaattatatctaaataaaatatacatgtacatatgttttgccaagtaataatataatagtgatactataatgac |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44848685 |
atctaataatattttacactagcttccaattatatctaaat-aaatatacatgttcatatgttttgccaagtaataatataatagtgatactataatgac |
44848587 |
T |
|
| Q |
908 |
ctatg |
912 |
Q |
| |
|
||||| |
|
|
| T |
44848586 |
ctatg |
44848582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 101 - 398
Target Start/End: Complemental strand, 44838317 - 44838008
Alignment:
| Q |
101 |
gattattatagaactgaacccaaacaaagtcaaaaagtcctgtttcaagggctcttcctaagaatctatcaggaaatggacattgaggagcagcacttag |
200 |
Q |
| |
|
||||||| || || || |||||||||||||||||||| ||||||||||| || | || || ||| |||| |||| |||||||||||||||||||| || |
|
|
| T |
44838317 |
gattattgtaaaattgtacccaaacaaagtcaaaaagacctgtttcaagtgcagtgcccaaaaatttatctggaattggacattgaggagcagcaccaag |
44838218 |
T |
|
| Q |
201 |
ataaacc------ccgt------tataatccttgagaaatcgtgcaaggtgttgccaattttttgtggaaccaatttcaatgtcaaaatctatgccatct |
288 |
Q |
| |
|
||| ||| || | |||| | || ||||| | |||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
44838217 |
atacaccttttttccatatctactataccctttaagaaaacctgcaaggtgttgccaattttcggtggaaccaagttcaatatcaaaatctattccatct |
44838118 |
T |
|
| Q |
289 |
aacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccataaatatcttgagaagcttctagcatcctcaattgaagacaaag |
388 |
Q |
| |
|
|| ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| || |||| | | |||| ||||||||||||||||| |||| |
|
|
| T |
44838117 |
aaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccataaaaattttgaaacgtttcttgcatcctcaattgaagataaag |
44838018 |
T |
|
| Q |
389 |
agtatcttcc |
398 |
Q |
| |
|
| || ||||| |
|
|
| T |
44838017 |
aatagcttcc |
44838008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 44817309 - 44817227
Alignment:
| Q |
264 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
346 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
44817309 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
44817227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 44834666 - 44834584
Alignment:
| Q |
264 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
346 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||||||||| || ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
44834666 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccata |
44834584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 719
Target Start/End: Complemental strand, 44837790 - 44837678
Alignment:
| Q |
613 |
ccattttggccccagtagatggctatgccaccagcataggaggttctaacaagagtgaggaa---aagaaaaagtgac---aaggtatgagaattctttg |
706 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| ||| ||| ||| ||||||||||| ||||| ||| ||| ||||| ||||| || |||| |
|
|
| T |
44837790 |
ccattttggccccaatagattgctatgccaccagcatgggaagttgcaactagagtgaggaatagaagaataagagacaaaaaggtgtgagagttttttg |
44837691 |
T |
|
| Q |
707 |
ccatctttgtgaa |
719 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44837690 |
ccatctttgtgaa |
44837678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 264 - 346
Target Start/End: Original strand, 17570995 - 17571077
Alignment:
| Q |
264 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
346 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
17570995 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
17571077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 48222511 - 48222567
Alignment:
| Q |
258 |
accaatttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttga |
314 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
48222511 |
accaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
48222567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University