View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_10 (Length: 635)
Name: NF17833_low_10
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 314 - 619
Target Start/End: Original strand, 40247431 - 40247736
Alignment:
| Q |
314 |
ttagaatatgagaactcaaaattgccgtttagtccactgttggattgcttttataaaaaacgacggcgtgtaaaaactgtataccgtctttggtatctat |
413 |
Q |
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| T |
40247431 |
ttagaatatgagaactcaaaattgtcgtttagtccaatgttggattgcttttataaaaaacgacggcgtgtaaaaactgcataccgtctttggtatctac |
40247530 |
T |
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| Q |
414 |
cagctgcgtttggatggaggaattaccggagtgcccagtgtgtcttcaaaactacgacgacgaaaacgcgattcctcgggtactctcatgcggccataca |
513 |
Q |
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| T |
40247531 |
cagctgcgtttggatggaggagttaccggagtgcccagtgtgtcttcaaaactacgacgacgaaaacgcgattcctcgagtactctcatgcggccataca |
40247630 |
T |
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| Q |
514 |
atttgtgaagcttgtcttgtacatcttccaccgcgttttccaaacacaattcgttgccccgcttgtactcaactcgttaaatattctcccaatcaaggcc |
613 |
Q |
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| T |
40247631 |
atttgtgaagcttgtcttgtacatcttccaccgcgttttccaaacacaattcgttgccccgcttgtactcaactcgttaaatattctcccaatcaaggcc |
40247730 |
T |
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| Q |
614 |
cttctt |
619 |
Q |
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|||||| |
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| T |
40247731 |
cttctt |
40247736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 40245875 - 40246052
Alignment:
| Q |
8 |
ccaagaatatatacatatatacataatacgagattcaaacctcaatcatnnnnnnnnnnnnnnn--tgcattaatgcttctaaacataaatcataataat |
105 |
Q |
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| T |
40245875 |
ccaataatatatacatatatacataatacgagattcaaacctcaatcataaaaaaaaaaaaaaaaatgcattaatgcttctaaacataaatcataataat |
40245974 |
T |
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| Q |
106 |
ttttcaaaatcatttccgtacaccacataaccaaataaacggttaaaatatcaattttaaatggaaccttttttgcca |
183 |
Q |
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| T |
40245975 |
ttttcaaaatcatttccgtacaccgcataaccaaataaacggttaaaatatcaattttaaatggaaccttttttgcca |
40246052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 40246096 - 40246196
Alignment:
| Q |
220 |
gactaaagctcacatcatttaaaaactggagtgttcgaatccgaagttctgcccttacatatatctatc---aaatggagttcgagaatgccaacattta |
316 |
Q |
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| T |
40246096 |
gactaaagctcacatcatttaataactggagtgtcggaatccgaacttctgcccttacatatatctatctatcaatggagttcgagattgccaacattta |
40246195 |
T |
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| Q |
317 |
g |
317 |
Q |
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| T |
40246196 |
g |
40246196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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