View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_105 (Length: 255)

Name: NF17833_low_105
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_105
NF17833_low_105
[»] chr2 (8 HSPs)
chr2 (1-255)||(39825521-39825775)
chr2 (171-255)||(39805490-39805574)
chr2 (64-255)||(39910467-39910654)
chr2 (10-142)||(39814162-39814294)
chr2 (198-255)||(39814009-39814066)
chr2 (198-255)||(39921786-39921843)
chr2 (198-255)||(39927074-39927131)
chr2 (152-255)||(39902118-39902221)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 39825775 - 39825521
Alignment:
Q  1 catttatcaaaagactattgcgaataggatttgaactgtgtgcaatctaacttcacgagtcaactgtcagccacatctagaccgtctgatcaagattgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39825775 catttatcaaaagactattgcgaataggatttgaactgtgtgcaatctaacttcacgagtcaactgtcagccacatctagaccgtctgatcaagattgaa 39825676  T
Q  101 cgtttaagatgtggctgactggttacaataacgagagtatgaatgaatgcacacaacatatatccttacaagtaacaatttaccaatactaggatttcgt 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  39825675 cgtttaagatgtggctgactggttacaataaggagagtatgaatgaatgcacacaacatatatccttacatgtaacaatttaccaatactaggattgcgt 39825576  T
Q  201 accggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaat 255  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39825575 accggtttgagattgacatgataaatgccaatgccataacttttgagtggagaat 39825521  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 39805574 - 39805490
Alignment:
Q  171 agtaacaatttaccaatactaggatttcgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaat 255  Q
    ||||| |||||| ||||||||  ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39805574 agtaaaaatttaacaatactaaaattgcgtactggtttgagattgacgtgataaatgccaatgccggaacttttgagtggagaat 39805490  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 255
Target Start/End: Complemental strand, 39910654 - 39910467
Alignment:
Q  64 ctgtcagccacatctagaccgtctgatcaagattgaacgtttaagatgtggctgactggttacaataacgagagtatgaatgaatgcacacaacatatat 163  Q
    ||||| |||||||||||||||||||||   ||||||||||||||||| |||||||| ||||||||||||| || |    || | | |||||||| || ||    
T  39910654 ctgtctgccacatctagaccgtctgatattgattgaacgtttaagatctggctgaccggttacaataacgggatt----ataactacacacaacctagat 39910559  T
Q  164 ccttacaagtaacaatttaccaatactaggatttcgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaat 255  Q
    ||| |||| |||  || ||   ||| |||| |  |||||||||||||||||||| |||||||| ||||  ||||||||||| ||||| ||||    
T  39910558 cctaacaaataaacatataaatataataggctagcgtaccggtttgagattgacgtgataaattccaacaccggaacttttaagtggtgaat 39910467  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 39814294 - 39814162
Alignment:
Q  10 aaagactattgcgaataggatttgaactgtgtgcaatctaacttcacg-agtcaactgtcagccacatctagaccgtctgatcaagattgaacgtttaag 108  Q
    ||||| |||||||||| ||||||||| |||||||||| | |||  ||| || || ||||| ||||||||||||||||||||||  |||| ||||||||||    
T  39814294 aaagaatattgcgaattggatttgaattgtgtgcaatgtgacta-acgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaag 39814196  T
Q  109 atgtggctgactggttacaataacgagagtatga 142  Q
    || |||||||| | ||||||||||| || |||||    
T  39814195 atctggctgaccgattacaataacgggattatga 39814162  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 39814066 - 39814009
Alignment:
Q  198 cgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaat 255  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| ||||    
T  39814066 cgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaat 39814009  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 39921843 - 39921786
Alignment:
Q  198 cgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaat 255  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| ||||    
T  39921843 cgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaat 39921786  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 39927131 - 39927074
Alignment:
Q  198 cgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtggagaat 255  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| ||||    
T  39927131 cgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaat 39927074  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 39902221 - 39902118
Alignment:
Q  152 cacaacatatatccttacaagtaacaatttaccaatactaggatttcgtaccggtttgagattgacatgataaatgccaatgccggaacttttgagtgga 251  Q
    |||||| |||||| || ||| |||  ||||| ||||| |||| |  ||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||     
T  39902221 cacaacctatatcattgcaaataaacatttaacaataataggctagcgtaccggtttaagattgacatggtaaattccaatgccagaacttttaagtggt 39902122  T
Q  252 gaat 255  Q
    ||||    
T  39902121 gaat 39902118  T

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