View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_108 (Length: 254)
Name: NF17833_low_108
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4388287 - 4388051
Alignment:
| Q |
1 |
acaaagcacaagttcgaattctggtgggaacaattctttgctaagctttacttaactttcggtagaacttcttaattactaggagcccccttcccctagg |
100 |
Q |
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| T |
4388287 |
acaaagcacaagtccgaattctggtgggaacaattctttgctaagctttacttaactttcggtagaacttcctaattactaggagcccccttcccctagg |
4388188 |
T |
|
| Q |
101 |
aaccggaagcttaacacacnnnnnnnnnttaaaattcttccgcccaccaaacacttctttgtgttttatgggtgcctcttttgttgatcctatcatctca |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
4388187 |
aaccggaagcttaacaca--aaaaaaaattaaaattcttccgcccaccaaacacttctttgtgtgttatgggtgcctc-tttgttgatcctatcatctca |
4388091 |
T |
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| Q |
201 |
tcaatgattgtgttgatttgtgtcgctctgccttcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4388090 |
tcaatgattgtgttgatttgtgtcgctctgccttcctttg |
4388051 |
T |
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