View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_11 (Length: 631)

Name: NF17833_low_11
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_11
NF17833_low_11
[»] chr2 (6 HSPs)
chr2 (26-521)||(26510935-26511427)
chr2 (300-474)||(14815333-14815504)
chr2 (347-443)||(9730589-9730685)
chr2 (400-473)||(26511693-26511766)
chr2 (251-364)||(4733015-4733128)
chr2 (549-594)||(26510864-26510909)
[»] chr5 (12 HSPs)
chr5 (251-517)||(19827915-19828181)
chr5 (251-483)||(8588860-8589093)
chr5 (347-517)||(19831805-19831975)
chr5 (353-483)||(23136813-23136940)
chr5 (335-482)||(35891866-35892013)
chr5 (335-460)||(38226126-38226251)
chr5 (335-483)||(14062346-14062494)
chr5 (334-517)||(8590271-8590454)
chr5 (424-513)||(14575277-14575366)
chr5 (303-368)||(6037274-6037339)
chr5 (343-513)||(35891506-35891672)
chr5 (348-424)||(2735336-2735412)
[»] chr8 (5 HSPs)
chr8 (252-483)||(8085442-8085673)
chr8 (233-483)||(33136808-33137059)
chr8 (344-517)||(7000653-7000826)
chr8 (341-472)||(7000992-7001122)
chr8 (293-367)||(33137503-33137577)
[»] chr1 (5 HSPs)
chr1 (218-472)||(12658994-12659240)
chr1 (251-517)||(12657805-12658073)
chr1 (362-488)||(12664068-12664194)
chr1 (450-517)||(12664408-12664475)
chr1 (322-384)||(6396183-6396245)
[»] chr6 (7 HSPs)
chr6 (335-520)||(10457921-10458106)
chr6 (300-472)||(32056490-32056659)
chr6 (283-384)||(16118517-16118618)
chr6 (335-480)||(6421591-6421728)
chr6 (24-106)||(32055392-32055471)
chr6 (293-409)||(32054913-32055030)
chr6 (56-149)||(20996403-20996495)
[»] chr3 (5 HSPs)
chr3 (255-480)||(53114193-53114419)
chr3 (396-517)||(6761836-6761957)
chr3 (347-406)||(1723240-1723299)
chr3 (343-408)||(27647895-27647960)
chr3 (453-481)||(1537962-1537990)
[»] chr4 (10 HSPs)
chr4 (292-517)||(32838941-32839164)
chr4 (348-488)||(46867485-46867624)
chr4 (353-480)||(20447150-20447273)
chr4 (419-519)||(41982695-41982795)
chr4 (341-483)||(46868792-46868933)
chr4 (293-378)||(41982602-41982687)
chr4 (401-476)||(20445895-20445970)
chr4 (344-472)||(30783476-30783604)
chr4 (355-479)||(51537963-51538087)
chr4 (396-479)||(51537309-51537392)
[»] chr7 (7 HSPs)
chr7 (341-483)||(47304117-47304259)
chr7 (292-472)||(5987699-5987880)
chr7 (238-331)||(9024986-9025080)
chr7 (335-463)||(20268323-20268456)
chr7 (446-483)||(30335102-30335139)
chr7 (232-385)||(30332450-30332603)
chr7 (428-470)||(30332378-30332420)
[»] scaffold0426 (1 HSPs)
scaffold0426 (349-480)||(3461-3591)


Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 26 - 521
Target Start/End: Complemental strand, 26511427 - 26510935
Alignment:
Q  26 acaaattacaataacatcattttcatccatagtgtttctattaacctctctttcaaatttttatggggtcctaatgaaaagaaaagttaacgaggtaact 125  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  26511427 acaaattacaataacatcattttcatccatagtgtttttcttaacctctctttcaaatttttatggcgtcctaatgaaaagaaaagttaccgaggtaact 26511328  T
Q  126 gaaacatgactttatctcatagatccacaagttgttgcaataaggttttcatcatcatcttgggtgcaaaatatatgcaaaatgcttttgggtgtagaaa 225  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  26511327 gaaacatgactttatctcatagatccagaagttgtggcaataaggttttcatcatcatcttgggtgcaaaaaatatgcaaaatgcttgtgggtgtagaaa 26511228  T
Q  226 acagatgataatttgaagtggtttgaacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaat 325  Q
    ||||||   ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26511227 acagat---aatttgaagtggtttcaacacttttgcatgaagaccttggagactacattcaacatagatgaagtttcatttcaaacatgcagaatgtaat 26511131  T
Q  326 aaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgat 425  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||| ||||||||    
T  26511130 aaataatagttaaatatgttcttttagtttttagtatttatttgacagcatcaaggatcagtttaataattaagataaataatttagggatcgatttgat 26511031  T
Q  426 agtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattttaag 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26511030 agtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatatgatgatctagaaatttgtaatgattttcattttaag 26510935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 300 - 474
Target Start/End: Complemental strand, 14815504 - 14815333
Alignment:
Q  300 ttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaag 399  Q
    ||||||||||||||||| |  ||||||||||   ||| ||| |||| |||||| |||||| |||||||||||| |||||||||| ||||| |||| | ||    
T  14815504 ttcatttcaaacatgcaaatggtaataaatatcagtttaattcatt-ttttagcttttagcatttatttgacattatcaaggattagtttgatagttgag 14815406  T
Q  400 ataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattca 474  Q
    |||||| ||  |  | | ||||||||||||| | |||||| |||  |||||||||||||||| ||||||||||||    
T  14815405 ataaattattgaatggtcgatttgatagtgagtgacataactca--gaccatcttgatttttcatgaataattca 14815333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 443
Target Start/End: Complemental strand, 9730685 - 9730589
Alignment:
Q  347 ttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattca 443  Q
    |||||| |||||| |||||||||||| |||||||||||| ||| |||  |||  |||||||| ||| ||||||||||||||||| | ||||| ||||    
T  9730685 ttttaggttttagcatttatttgacaatatcaaggatcaatttgataaataaattaaataatttagagattgatttgatagtgagtgacatagttca 9730589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 26511693 - 26511766
Alignment:
Q  400 ataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattc 473  Q
    |||||||||  || |||||||||||| |||  | ||||||||||  ||||||||| ||||||||||||||||||    
T  26511693 ataaataattcagagattgatttgatggtgggtgacataattcagagaccatcttaatttttaatgaataattc 26511766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 364
Target Start/End: Original strand, 4733015 - 4733128
Alignment:
Q  251 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggtt-aaatacattcttt 349  Q
    |||||||||||| |||||||||| | ||||   ||||||| |||| | |||||||| ||||||||| ||  ||||||||||  ||| ||| |||||||||    
T  4733015 aacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattt-aaacatgcaaaagataataaataacagttaaaacacattcttt 4733113  T
Q  350 tagtttttagtattt 364  Q
    ||| ||||| |||||    
T  4733114 tagcttttaatattt 4733128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 594
Target Start/End: Complemental strand, 26510909 - 26510864
Alignment:
Q  549 ttttcaatcaatttcgttcctaaatatgtggtatatgagctggcaa 594  Q
    ||||| ||||||||||| ||||||||| ||||||||||| ||||||    
T  26510909 ttttcgatcaatttcgtccctaaatatatggtatatgagttggcaa 26510864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 251 - 517
Target Start/End: Complemental strand, 19828181 - 19827915
Alignment:
Q  251 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattctttt 350  Q
    ||||||||| |||||| | ||||||  |||  |||||||| |||||| |||||||||||| ||||| ||  ||||||||||| |||||| ||||||||||    
T  19828181 aacacttttccatgaaaatcttgaaggctaggttcaacatcgatgaatcttcatttcaaatatgcaaaagataataaataatagttaaacacattctttt 19828082  T
Q  351 agtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggacca 450  Q
    ||||||||| ||||| || |||  |||| |||||||||| ||||  |||||||||||| || | || ||||||||| ||| | |||||||||||||||||    
T  19828081 agtttttagcatttacttaacaacatcatggatcagttttatagtcaagataaataatttaagaatcgatttgatattgagtgacataattcatggacca 19827982  T
Q  451 tcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 517  Q
    |||||||||||||||||||||| |||||||||| |||   | ||  |||||||||||| ||||||||    
T  19827981 tcttgatttttaatgaataatttagggatcgatttgacagtgtaacaatttgtaatgactttcattt 19827915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 251 - 483
Target Start/End: Complemental strand, 8589093 - 8588860
Alignment:
Q  251 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatgg--ttaaatacattctt 348  Q
    ||||||||||||||||||| ||| |  ||||||| ||||| |||||| |||||||| ||||||| | |||||||||||| |  |  ||||| ||||||||    
T  8589093 aacacttttgcatgaagactttggaggctacattgaacatggatgaaacttcattttaaacatgaa-aatgtaataaattagagagttaaacacattctt 8588995  T
Q  349 ttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaa-taacataattcatgga 447  Q
    | || |||||| |||||||||| | |||||||||||| ||| |||| |||||| ||||||  |||||| ||||||||| |||| | |||||||||| |||    
T  8588994 tcagattttagaatttatttgatactatcaaggatcaatttgatagttaagatgaataattaagggatcgatttgata-tgaagtgacataattcaagga 8588896  T
Q  448 ccatcttgatttttaatgaataattcagggatcgat 483  Q
    ||||||| ||||||| | ||||||| | ||||||||    
T  8588895 ccatcttaatttttagtaaataatttaaggatcgat 8588860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 347 - 517
Target Start/End: Original strand, 19831805 - 19831975
Alignment:
Q  347 ttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatgg 446  Q
    ||||||||||||| |||||||||||| |||||  ||||||||| || | |||||||||||||  |  ||| ||||||||||||| | ||||||||||  |    
T  19831805 ttttagtttttagcatttatttgacaatatcagagatcagtttgatcgttaagataaataattcaatgatcgatttgatagtgattgacataattcacag 19831904  T
Q  447 accatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 517  Q
    |||||||||||||||||| ||||||||| ||||| || |||  || ||  |||||||||||| ||||||||    
T  19831905 accatcttgatttttaattaataattcaaggatcaatttgacaatgtaacaatttgtaatgactttcattt 19831975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 353 - 483
Target Start/End: Complemental strand, 23136940 - 23136813
Alignment:
Q  353 tttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatc 452  Q
    ||||||| |||||||||||||||||||   |||  || |||| || ||||||||||| ||||||  |||||||||||| | |||||||||||| |||| |    
T  23136940 tttttagcatttatttgacagtatcaa---tcaaattgatagatacgataaataatacagggatcaatttgatagtgagtgacataattcatgaaccaac 23136844  T
Q  453 ttgatttttaatgaataattcagggatcgat 483  Q
    ||||||||||||||||||||||| |||||||    
T  23136843 ttgatttttaatgaataattcagagatcgat 23136813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 335 - 482
Target Start/End: Original strand, 35891866 - 35892013
Alignment:
Q  335 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 434  Q
    ||||| |||||||||||||||||| ||||||||||| || ||||  |||||| || || | |||||||||||||  |  ||| ||||||||||||  | |    
T  35891866 ttaaacacattcttttagtttttaatatttatttgatagcatcagagatcagattgattgataagataaataattcatagatagatttgatagtgggtga 35891965  T
Q  435 cataattcatggaccatcttgatttttaatgaataattcagggatcga 482  Q
    ||||||||| | |||| ||||||||||||||||||||| |||||||||    
T  35891966 cataattcaagaaccaacttgatttttaatgaataatttagggatcga 35892013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 460
Target Start/End: Original strand, 38226126 - 38226251
Alignment:
Q  335 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 434  Q
    ||||||||||| ||||| ||||||  |||||||||| ||||||||||||||| || |||| ||||||||||||| | | ||| | ||||||| ||| | |    
T  38226126 ttaaatacattattttaatttttaacatttatttgatagtatcaaggatcagattgatagataagataaataatttggtgatcgttttgataatgagtga 38226225  T
Q  435 cataattcatggaccatcttgatttt 460  Q
    ||||||||||||||||  ||||||||    
T  38226226 cataattcatggaccaatttgatttt 38226251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 335 - 483
Target Start/End: Complemental strand, 14062494 - 14062346
Alignment:
Q  335 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 434  Q
    ||||| ||||||||| |  |||| | ||||||||||| ||||| ||||||| ||| |||  |||||||||||||  |  || |||||||||| ||||| |    
T  14062494 ttaaacacattctttcacatttttgcatttatttgacggtatctaggatcaatttgatatataagataaataattcatagaatgatttgatattgaatga 14062395  T
Q  435 cataattcatggaccatcttgatttttaatgaataattcagggatcgat 483  Q
    ||||||| |||||||| ||||||||| ||||| ||||| ||||||||||    
T  14062394 cataatttatggaccaacttgattttcaatgagtaatttagggatcgat 14062346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 517
Target Start/End: Original strand, 8590271 - 8590454
Alignment:
Q  334 gttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaata 433  Q
    |||||| ||||||||| | ||||||| |||||||||| |||| ||  ||||| |||||||| |||||||||||||  |   ||  ||||||||| ||| |    
T  8590271 gttaaacacattctttcattttttagcatttatttgatagtaccattgatcaatttaatagttaagataaataatccatatatcaatttgatag-gaaga 8590369  T
Q  434 -acataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 517  Q
     |||||||||| || |||| ||| ||||||  |||||||||| |||||||| |||  || ||  ||||| |||||||||||||||    
T  8590370 gacataattcaagggccatattgttttttagggaataattcaaggatcgatttgacaatataacaatttataatgattttcattt 8590454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 424 - 513
Target Start/End: Complemental strand, 14575366 - 14575277
Alignment:
Q  424 atagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttc 513  Q
    ||||||| | |||||||||||| |||| ||||||||||||||||||||| |||||| ||| |||  || ||  |||||||||||| ||||    
T  14575366 atagtgagtgacataattcatgaaccaacttgatttttaatgaataatttagggattgatttgacaatgtaacaatttgtaatgactttc 14575277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 6037339 - 6037274
Alignment:
Q  303 atttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttattt 368  Q
    |||| ||||||||| || |||||||||||| |  ||||| ||||||||||||||||| ||||||||    
T  6037339 attttaaacatgcaaaaggtaataaataataggcaaatatattcttttagtttttagcatttattt 6037274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 513
Target Start/End: Complemental strand, 35891672 - 35891506
Alignment:
Q  343 attcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattc 442  Q
    ||||||||  ||||||  |||||||||||| |||||| ||| || || |||| ||| |||||||||  | ||||  |||||||||||| ||| | |||||    
T  35891672 attcttttgatttttaacatttatttgacaatatcaaagattagattgatagataaaataaataattcatggatcaatttgatagtgagtaatacaattc 35891573  T
Q  443 atggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttc 513  Q
    | |||||| |    |||||||||||||||| | ||||| || ||||  | ||  ||||||||||| |||||    
T  35891572 agggaccaac----tttttaatgaataatttatggatcaatttgatagtgtaacaatttgtaatggttttc 35891506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 2735412 - 2735336
Alignment:
Q  348 tttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttga 424  Q
    ||||||||||||||||||||| |   ||| |||||||| | | |||| |||||||||||||  |||||| |||||||    
T  2735412 tttagtttttagtatttatttaattatatgaaggatcattatgatagttaagataaataattgagggatcgatttga 2735336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 252 - 483
Target Start/End: Complemental strand, 8085673 - 8085442
Alignment:
Q  252 acacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattctttta 351  Q
    |||||||||||||||||| ||| |  ||||||| | |||  ||||| | | ||||||||||| || ||  || |||||||| |||||| ||||| |||      
T  8085673 acacttttgcatgaagacattggacgctacattaagcatgaatgaaacattatttcaaacatccaaaagatagtaaataatagttaaacacattttttag 8085574  T
Q  352 gtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccat 451  Q
    |||||||| |||||||||||| |||||   |||||||  |||| ||||||||||||| ||  ||| ||||||||||||| | ||||||||||||||||||    
T  8085573 gtttttagcatttatttgacaatatcagatatcagttcgatagttaagataaataatttaatgatcgatttgatagtgagtgacataattcatggaccat 8085474  T
Q  452 cttgatttttaatgaataattcagggatcgat 483  Q
    ||||||||||||||| |||| ||| |||||||    
T  8085473 cttgatttttaatgagtaatccagtgatcgat 8085442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 233 - 483
Target Start/End: Complemental strand, 33137059 - 33136808
Alignment:
Q  233 ataatttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataa 331  Q
    |||||||||| ||||||  |||||| |||| ||| ||||||  |  |||| |||||||| |||||| |||||||||||| ||||| || |||||||||||    
T  33137059 ataatttgaattggttttcaacactgttgcctgacgacctttgatgctacgttcaacatggatgaaacttcatttcaaatatgcaaaaggtaataaataa 33136960  T
Q  332 tggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaa 431  Q
      |||||| | ||| ||||| ||||||| |||||||||  |||||||  ||||||||| |||| ||| || |||| | |||   |  ||||||||| ||     
T  33136959 ccgttaaacatattattttaatttttagcatttatttgcgagtatcagagatcagtttgatagttaacatgaatactttagaagtcaatttgatagcgag 33136860  T
Q  432 taacataattcatggaccatcttgatttttaatgaataattcagggatcgat 483  Q
    | |||||||||| |||| ||||||||||| ||||||||||| ||||||||||    
T  33136859 tgacataattcaaggacgatcttgattttcaatgaataatttagggatcgat 33136808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 344 - 517
Target Start/End: Complemental strand, 7000826 - 7000653
Alignment:
Q  344 ttcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattca 443  Q
    |||||||||||||||| ||||||||||| ||||||  |||||  || |||| || ||||||||||  || ||| ||||||||| | | | ||||||||||    
T  7000826 ttcttttagtttttagcatttatttgacggtatcagagatcaaattgatagatatgataaataattcagagatcgatttgatattaagtgacataattca 7000727  T
Q  444 tggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 517  Q
     |||||| |||||||||||| |||||||| || ||| ||| |||| || ||  ||||| |||||| ||| ||||    
T  7000726 aggaccaacttgatttttaaggaataatttagagattgatttgataatgtaccaatttataatgactttaattt 7000653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 472
Target Start/End: Original strand, 7000992 - 7001122
Alignment:
Q  341 acattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataat 440  Q
    |||| |||||||| ||||  |||||||||||| ||||||||||||  || |||| ||  ||||||||| |||| ||  |||||| | ||| | |||||||    
T  7000992 acatgcttttagtgtttaacatttatttgacaatatcaaggatcaaattgatagatataataaataatttagg-atccatttgaaattgagtgacataat 7001090  T
Q  441 tcatggaccatcttgatttttaatgaataatt 472  Q
    |||||||||  |||||||||||| ||||||||    
T  7001091 tcatggacccacttgatttttaaggaataatt 7001122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 367
Target Start/End: Original strand, 33137503 - 33137577
Alignment:
Q  293 atgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatt 367  Q
    ||||| |||||| |||||||| || || |||||||||||   ||||| || || |||||||||||||||||||||    
T  33137503 atgaaacttcatgtcaaacattcaaaaggtaataaataacaattaaacacgtttttttagtttttagtatttatt 33137577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 218 - 472
Target Start/End: Original strand, 12658994 - 12659240
Alignment:
Q  218 tgtagaaaacagatgataatttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgca 316  Q
    ||||||||||| | || |||||||||||||||  ||||||||||||||||||||||  |   ||| || ||||| ||||||  ||||||||||||||| |    
T  12658994 tgtagaaaacaaa-gagaatttgaagtggttttcaacacttttgcatgaagaccttcgaggatacgttgaacatggatgaaatttcatttcaaacatg-a 12659091  T
Q  317 gaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggat 416  Q
     ||||||||||||||  |||||| ||||||||| ||||||||| |||||||||| ||      |||||| ||| |||| |||||||||||||  || |||    
T  12659092 aaatgtaataaataa-agttaaacacattctttcagtttttagcatttatttgatag------ggatcaatttgatagttaagataaataattcagagat 12659184  T
Q  417 tgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 472  Q
    ||||||||||| ||   |||||||||| |||||||||||||||||| |||||||||    
T  12659185 tgatttgatagggagagacataattcaaggaccatcttgatttttagtgaataatt 12659240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 251 - 517
Target Start/End: Complemental strand, 12658073 - 12657805
Alignment:
Q  251 aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattctttt 350  Q
    ||||||||| |||||||||||| ||   || ||| || || |||||| ||||||||||||| || | |||||||| ||| ||  ||||| |||||||||     
T  12658073 aacacttttacatgaagacctttaaggatatattgaatatggatgaaacttcatttcaaacttgaa-aatgtaattaattatatttaaacacattctttc 12657975  T
Q  351 agtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataac----ataattcatgg 446  Q
    | ||||||| ||||||||||| || ||| |||||| ||| |||| |||||||||||||  |||||| ||||||||||||| | ||    |||||||| ||    
T  12657974 attttttaggatttatttgactgtttcagggatcaatttgatagttaagataaataattcagggatcgatttgatagtgagtgacatatataattcaagg 12657875  T
Q  447 accatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 517  Q
    || ||||||| |||||||||||||| ||||||| ||| |||  || ||  |||||||||| | ||||||||    
T  12657874 acaatcttga-ttttaatgaataatccagggattgatttgacaatataataatttgtaattactttcattt 12657805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 362 - 488
Target Start/End: Complemental strand, 12664194 - 12664068
Alignment:
Q  362 tttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgattttt 461  Q
    ||||||||||||||||||| |||| ||| |||| |||||||||||||  | ||||  |||| ||||||  | |||||||||| ||||||| || ||||||    
T  12664194 tttatttgacagtatcaagaatcaatttgatagttaagataaataattcatggatcaatttaatagtgtgtgacataattcaaggaccattttaattttt 12664095  T
Q  462 aatgaataattcagggatcgatctgat 488  Q
    ||||||||||||| |||| ||| ||||    
T  12664094 aatgaataattcaaggattgatttgat 12664068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 517
Target Start/End: Original strand, 12664408 - 12664475
Alignment:
Q  450 atcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattt 517  Q
    ||||||||||||||||||||||||| |||||||| |||  || ||  |||||||||||| ||||||||    
T  12664408 atcttgatttttaatgaataattcaaggatcgatgtgacaatgtaataatttgtaatgaatttcattt 12664475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 6396183 - 6396245
Alignment:
Q  322 taataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatc 384  Q
    ||||||||||| |||||| ||||||||||| ||||||| |||||||||||  ||||| |||||    
T  6396183 taataaataatagttaaacacattcttttattttttagcatttatttgactatatcagggatc 6396245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 335 - 520
Target Start/End: Original strand, 10457921 - 10458106
Alignment:
Q  335 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 434  Q
    ||||| ||||||||||||||||||  |||||||||||||| |||  |||||  ||||||| ||||||||||||| ||||||| ||||||||| ||| | |    
T  10457921 ttaaacacattcttttagtttttaacatttatttgacagtctcagagatcatattaatagataagataaataatttagggatcgatttgataatgagtga 10458020  T
Q  435 cataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcattttaa 520  Q
    ||||||||| |||||| ||| |||||||||||||||||||  ||||||| |||   | ||  |||||||||||| |||| ||||||    
T  10458021 cataattcagggaccaacttcatttttaatgaataattcaacgatcgatttgacagtgtaacaatttgtaatgactttcgttttaa 10458106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 300 - 472
Target Start/End: Original strand, 32056490 - 32056659
Alignment:
Q  300 ttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaag 399  Q
    |||||||||| |||||| || ||||| | |||  |||||| ||||||||||||||||||| ||||||||||  ||||||  ||||| ||| |||| ||||    
T  32056490 ttcatttcaaccatgcaaaaggtaatga-taagagttaaacacattcttttagtttttagcatttatttga--gtatcagagatcaatttgatagttaag 32056586  T
Q  400 ataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 472  Q
    |||||||||  || |||| |||||||||||| | |||||||| | ||| ||||||||||||||||||||||||    
T  32056587 ataaataattcagagattaatttgatagtgagtgacataatttagggatcatcttgatttttaatgaataatt 32056659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 16118517 - 16118618
Alignment:
Q  283 ttcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaagga 382  Q
    ||||||||  ||||| |||||||| ||||||| | || ||||||||||||||||||| | |||||||||||||||   ||||||||||||||||||||||    
T  16118517 ttcaacatgaatgaaacttcattttaaacatggaaaaggtaataaataatggttaaacatattcttttagtttttgacatttatttgacagtatcaagga 16118616  T
Q  383 tc 384  Q
    ||    
T  16118617 tc 16118618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 480
Target Start/End: Complemental strand, 6421728 - 6421591
Alignment:
Q  335 ttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataa 434  Q
    ||||| |||||||||||||||||| | ||||||||||| ||||  ||||||    ||||    ||||||||||| ||||||| ||||||||||||| | |    
T  6421728 ttaaacacattcttttagtttttaatttttatttgacaatatctgggatca----aata----agataaataatttagggatcgatttgatagtgagtga 6421637  T
Q  435 cataattcatggaccatcttgatttttaatgaataattcagggatc 480  Q
    |||||||||   || | ||||||||| |||||||||| || |||||    
T  6421636 cataattcagacactaacttgattttgaatgaataatccaaggatc 6421591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 32055392 - 32055471
Alignment:
Q  24 aaacaaattacaataacatcattttcatccatagtgtttctattaacctctctttcaaatttttatggggtcctaatgaaaag 106  Q
    ||||||||||||||||||| ||||||   || || |||| | |||||||| |||| ||||||||||||| |||||||||||||    
T  32055392 aaacaaattacaataacattattttc---caaagagtttttcttaacctccctttgaaatttttatgggatcctaatgaaaag 32055471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 32055030 - 32054913
Alignment:
Q  293 atgaagcttcatttcaaacatgcagaatg-taataaataatggttaaatacattct-tttagtttttagtatttatttgacagtatcaaggatcagttta 390  Q
    ||||| |||||| ||||||||||| |||| ||||||||||  |||||| ||||| | |||  ||||| | |||||||||||| |||||  |||||||||     
T  32055030 atgaaacttcatctcaaacatgca-aatgataataaataacagttaaacacattttattttatttttcgcatttatttgacaatatcatagatcagtttg 32054932  T
Q  391 atagctaagataaataata 409  Q
    |||| ||| ||||||||||    
T  32054931 atagttaacataaataata 32054913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 20996403 - 20996495
Alignment:
Q  56 agtgtttctattaacctctctttcaaatttttatggggtcctaatgaaaagaaaagttaacgaggtaactgaaacatgactttatctcatagat 149  Q
    ||||||| | |||||||| ||||| | |||||||||||| |||||||||||||  || |  |||||||||||||  || || ||||||||||||    
T  20996403 agtgtttttcttaacctccctttccagtttttatggggt-ctaatgaaaagaatggtaattgaggtaactgaaatgtgcctctatctcatagat 20996495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 255 - 480
Target Start/End: Original strand, 53114193 - 53114419
Alignment:
Q  255 cttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataatg-gttaaatacattcttttagt 353  Q
    ||||| ||||||||| ||  | ||||| |||||||| ||||||  ||||||||||||||||| |  |||||||||||   |||||| || ||||||||||    
T  53114193 cttttacatgaagacttttgagactacgttcaacatcgatgaaaattcatttcaaacatgcaaatggtaataaataaacagttaaacacgttcttttagt 53114292  T
Q  354 ttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatct 453  Q
    |||||| ||||| | |||| ||||| ||||  |||| |||  ||| ||| ||||| || ||||  |||| ||||||| | ||||||||||||||||| ||    
T  53114293 ttttagcatttaatagacaatatcagggatttgtttgataattaaaatagataatctaaggatcaatttcatagtgagtgacataattcatggaccagct 53114392  T
Q  454 tgatttttaatgaataattcagggatc 480  Q
    ||||||||||||||||||| |||||||    
T  53114393 tgatttttaatgaataatttagggatc 53114419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 396 - 517
Target Start/End: Original strand, 6761836 - 6761957
Alignment:
Q  396 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctag 495  Q
    |||||||||||||  | |||||||||| | ||||| |||||||||||| ||||||  ||| |||||||||||||||| ||||||| || |||   ||||     
T  6761836 taagataaataattcaaggattgatttaacagtgagtaacataattcagggaccaatttggtttttaatgaataatttagggatcaatttgaccgtctaa 6761935  T
Q  496 aaatttgtaatgattttcattt 517  Q
     |||||||||||| ||||||||    
T  6761936 caatttgtaatgactttcattt 6761957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 1723299 - 1723240
Alignment:
Q  347 ttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaata 406  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| |||  |||||||||||    
T  1723299 ttttagtttttagcatttatttgacagtatcaaggatcaatttgatatataagataaata 1723240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 27647895 - 27647960
Alignment:
Q  343 attcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataat 408  Q
    ||||||||  ||||||| |||||||||||| ||| ||| |||| ||| |||| |||||||||||||    
T  27647895 attctttttatttttagcatttatttgacaatattaagtatcaatttgatagttaagataaataat 27647960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 481
Target Start/End: Original strand, 1537962 - 1537990
Alignment:
Q  453 ttgatttttaatgaataattcagggatcg 481  Q
    |||||||||||||||||||||||||||||    
T  1537962 ttgatttttaatgaataattcagggatcg 1537990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 292 - 517
Target Start/End: Original strand, 32838941 - 32839164
Alignment:
Q  292 gatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatcagtttaa 391  Q
    |||||| ||||||||| |||||| | |||| ||||||| | ||||||| ||||||||| | ||||||| ||||||||||| |||||| |||||| ||| |    
T  32838941 gatgaaacttcatttctaacatgaa-aatgcaataaattacggttaaacacattctttcaatttttagcatttatttgacggtatcatggatcaatttga 32839039  T
Q  392 tagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgat 491  Q
    ||| |||||||||||||  || ||   |||| |||| || | ||| |||||| |||||||||||||| ||| |||||||||||||||||||  |||  ||    
T  32839040 tagttaagataaataattcagagaccaattt-atagggagtgacaaaattcaaggaccatcttgattcttagtgaataattcagggatcgacttgacaat 32839138  T
Q  492 ctagaaatttgtaatgattttcattt 517  Q
     ||  |||||||||||| ||||||||    
T  32839139 gtaacaatttgtaatgactttcattt 32839164  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 348 - 488
Target Start/End: Complemental strand, 46867624 - 46867485
Alignment:
Q  348 tttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatgga 447  Q
    |||| ||||||  |||||||||| ||||||||||||||  || |||  ||| |||||||||  |  ||| ||||||||||||| | |||||||| | |||    
T  46867624 tttaatttttaacatttatttgatagtatcaaggatcaaattgataaataaaataaataattcatagatcgatttgatagtgagtgacataattta-gga 46867526  T
Q  448 ccatcttgatttttaatgaataattcagggatcgatctgat 488  Q
    ||| ||||||||||||||||||||||| |||||||| ||||    
T  46867525 ccaacttgatttttaatgaataattcaaggatcgatttgat 46867485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 353 - 480
Target Start/End: Original strand, 20447150 - 20447273
Alignment:
Q  353 tttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatc 452  Q
    ||||||| |||||||||||||   | |||||||  || |||| |||||||||||||  ||||||  |||||||||||| | || |||||||||||||| |    
T  20447150 tttttagcatttatttgacag---cgaggatcaaattgatagataagataaataattcagggatcaatttgatagtgagtgac-taattcatggaccaac 20447245  T
Q  453 ttgatttttaatgaataattcagggatc 480  Q
    |||||||||||||||||| ||| |||||    
T  20447246 ttgatttttaatgaataaatcaaggatc 20447273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 419 - 519
Target Start/End: Original strand, 41982695 - 41982795
Alignment:
Q  419 atttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggatcgatctgatgatctagaaatttgtaatgattttcatttt 518  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |  ||||||| ||||  | ||  |||||||||||| ||| |||||    
T  41982695 atttgatagtgagttacataattcatggaccaacttgatttttaatgaataatttaaagatcgatttgatagtgtaacaatttgtaatgacttttatttt 41982794  T
Q  519 a 519  Q
    |    
T  41982795 a 41982795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 483
Target Start/End: Original strand, 46868792 - 46868933
Alignment:
Q  341 acattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataat 440  Q
    |||||| |||||| ||||| ||||||||||||||    || |||||||| |||| |||||||||||||  |  ||| ||||||| ||||| | ||||| |    
T  46868792 acattcgtttagtatttaggatttatttgacagtgctgag-atcagtttgatagataagataaataattcattgatcgatttgacagtgagtgacatatt 46868890  T
Q  441 tcatggaccatcttgatttttaatgaataattcagggatcgat 483  Q
    |||  ||||| |||||||||||||||||||||||  |||||||    
T  46868891 tcaatgaccaacttgatttttaatgaataattcaatgatcgat 46868933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 378
Target Start/End: Original strand, 41982602 - 41982687
Alignment:
Q  293 atgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtttttagtatttatttgacagtatca 378  Q
    ||||| ||| |||||||||||| | || |||||||||||  |||||| |  |||||||||||||||| ||||||||||||||||||    
T  41982602 atgaaacttaatttcaaacatgtaaaaggtaataaataacagttaaacatgttcttttagtttttagcatttatttgacagtatca 41982687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 20445970 - 20445895
Alignment:
Q  401 taaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagg 476  Q
    |||||||| ||| ||||||||||||||| | | |||||||||| |||||  ||||||||||||| |||||||||||    
T  20445970 taaataatttagagattgatttgatagtcattgacataattcagggacctgcttgatttttaatcaataattcagg 20445895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 30783604 - 30783476
Alignment:
Q  344 ttcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattca 443  Q
    |||||||||||||||  |||||||||||||||||| ||||||  || |||| |  ||||||||||  |||||| ||||| ||| ||| | || |||||||    
T  30783604 ttcttttagtttttaacatttatttgacagtatcatggatcaaattgatagatttgataaataattcagggatcgatttaatattgagtgacgtaattca 30783505  T
Q  444 tggaccatcttgatttttaatgaataatt 472  Q
      ||||| ||| |||||||  ||||||||    
T  30783504 gagaccaacttaatttttatggaataatt 30783476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 479
Target Start/End: Original strand, 51537963 - 51538087
Alignment:
Q  355 tttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatctt 454  Q
    |||| ||||||||| ||||||| | ||| ||  || |||| |||||||||||||  | |||| ||||||||| ||| | |||||||||| |||||| ||     
T  51537963 tttattatttatttaacagtattagggaccaaattgatagataagataaataattcatggatcgatttgataatgagtgacataattcagggaccaactc 51538062  T
Q  455 gatttttaatgaataattcagggat 479  Q
     || |||||||||||||||| ||||    
T  51538063 aatctttaatgaataattcaaggat 51538087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 479
Target Start/End: Complemental strand, 51537392 - 51537309
Alignment:
Q  396 taagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataattcagggat 479  Q
    |||||||||||||  || ||| ||||||||||||| | ||||||| || |||| | ||| |||||||||||||| |||||||||    
T  51537392 taagataaataattaagtgatcgatttgatagtgagtgacataatccagggactaacttaatttttaatgaatagttcagggat 51537309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 341 - 483
Target Start/End: Original strand, 47304117 - 47304259
Alignment:
Q  341 acattcttttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataat 440  Q
    ||||||||||||||||||| || |||||||| ||||||||||| |  || |||  |||||||||| ||  | |||| ||||||| ||||| |  ||||||    
T  47304117 acattcttttagtttttaggatatatttgacggtatcaaggattaaattgatatataagataaatgattcaaggatcgatttgaaagtgagtggcataat 47304216  T
Q  441 tcatggaccatcttgatttttaatgaataattcagggatcgat 483  Q
    ||| |||||| |||||||||||||||||||||  |||||||||    
T  47304217 tcaaggaccaacttgatttttaatgaataattatgggatcgat 47304259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 472
Target Start/End: Original strand, 5987699 - 5987880
Alignment:
Q  292 gatgaagcttcatttcaaacatgcagaatgtaataaataatggttaaatacattcttttagtt-tttagtatttatttgacagtatcaaggatcagttta 390  Q
    |||||| |||| ||||||||||||| || |||||||||||  || ||| ||||| |||||  | ||||| |||||||||  || |||||| ||||||||     
T  5987699 gatgaaacttcgtttcaaacatgcaaaaggtaataaataacagtcaaacacatttttttaaatgtttagcatttatttggtagcatcaagaatcagtttg 5987798  T
Q  391 atagctaagataaataatatagggattgatttgatagtgaataacataattcatggaccatcttgatttttaatgaataatt 472  Q
    |||| ||||| || ||||  |  ||| | ||||||||  | |||||||||||| || ||||||||||||||||| |||||||    
T  5987799 atagttaagaaaattaattgaaagatcggtttgatagaaactaacataattcagggtccatcttgatttttaattaataatt 5987880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 9024986 - 9025080
Alignment:
Q  238 ttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaataa 331  Q
    ||||||||||||  |||||||||||||||| |||||| | ||||| || || || |||||| |||||||||||||||||| || |||||||||||    
T  9024986 ttgaagtggttttcaacacttttgcatgaacaccttggagactacgttgaagatggatgaaacttcatttcaaacatgcaaaaagtaataaataa 9025080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 335 - 463
Target Start/End: Complemental strand, 20268456 - 20268323
Alignment:
Q  335 ttaaatacattcttttagtttttagtatttatttgacagtatcaa----ggatcagtttaatagctaa-gataaataatatagggattgatttgatagtg 429  Q
    ||||| ||||||||||||||||||  || |||||||| |||||||    ||||||| || |||| ||| |||||||||| || |||| ||||| ||||||    
T  20268456 ttaaacacattcttttagtttttaacatgtatttgacggtatcaatcacggatcagattgatagataaagataaataatttatggatcgatttaatagtg 20268357  T
Q  430 aataacataattcatggaccatcttgatttttaa 463  Q
    | | |||||||||||  |||| ||||||||||||    
T  20268356 agtgacataattcattaaccaacttgatttttaa 20268323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 483
Target Start/End: Original strand, 30335102 - 30335139
Alignment:
Q  446 gaccatcttgatttttaatgaataattcagggatcgat 483  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30335102 gaccatcttgatttttaatgaataattcagggatcgat 30335139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 30332603 - 30332450
Alignment:
Q  232 gataatttgaagtggtttg-aacacttttgcatgaagaccttgaaaactacattcaacatagatgaagcttcatttcaaacatgcagaatgtaataaata 330  Q
    ||||||||||||||||||  |||| ||||| |||||||| ||| | | ||| |  ||| | |||||| ||| |||| ||||| ||| ||| ||| |||||    
T  30332603 gataatttgaagtggttttcaacatttttgtatgaagac-ttggacattacgtctaacttggatgaaactttatttgaaacacgcaaaatttaacaaata 30332505  T
Q  331 atggttaaatacattcttttagtttttagtatttatttgacagtatcaaggatca 385  Q
    |   ||||| ||||||||| ||||||||  ||||||||||||||||||| |||||    
T  30332504 acatttaaacacattctttcagtttttaacatttatttgacagtatcaatgatca 30332450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 30332420 - 30332378
Alignment:
Q  428 tgaataacataattcatggaccatcttgatttttaatgaataa 470  Q
    ||||| |||||||||| | ||||||||||||||||||||||||    
T  30332420 tgaatgacataattcaggaaccatcttgatttttaatgaataa 30332378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 480
Target Start/End: Complemental strand, 3591 - 3461
Alignment:
Q  349 ttagtttttagtatttatttgacagtatcaaggatcagtttaatagctaagataaataatatagggattgatttgatagtgaataacataattcatggac 448  Q
    ||||||||||  ||||||||||||||||||| |||||  || |||  ||| | ||||||| ||||||| |||||| | |||||| |||||||| | | ||    
T  3591 ttagtttttaccatttatttgacagtatcaatgatcaaattgatatataaaa-aaataatttagggatcgatttggtggtgaatgacataatttaagaac 3493  T
Q  449 catcttgatttttaatgaataattcagggatc 480  Q
    || ||| |||||||||||||||||||| ||||    
T  3492 caactttatttttaatgaataattcagagatc 3461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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